Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq130 87.8 2e-12 seq249 84.2 2e-11 >seq130 Length=530367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | ||| |||||| ||||| | || || || || ||| Sbjct 6979 AAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAATAAAGATTAATTTTCGCTGGAAAA 6920 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || | |||||| | |||| | |||||||||||||| | || ||||| ||||| || Sbjct 6919 TAATTAGAAGATGGAAGAACTTTATCCGATTACAATATTTAAAAAGAATCCACTCTCCAT 6860 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | || ||| ||||| ||||||| Sbjct 6859 TTAGTATTAAGATTAAGAGGAGG 6837 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | ||| || ||| ||||| | || || || || ||| Sbjct 8798 AAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAATAAAGATTAATTTTCGCTGGAAAA 8857 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || | |||||| | |||| | |||||||||||||| | || ||||| ||||| || Sbjct 8858 TAATTAGAAGATGGAAGAACTTTATCCGATTACAATATTTAAAAAGAATCCACTCTCCAT 8917 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | || ||| ||||| ||||||| Sbjct 8918 TTAGTATTAAGATTAAGAGGAGG 8940 >seq249 Length=567749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| |||||| ||||| | ||||| || || ||| || | ||| Sbjct 154776 GATAAAGAAGGTATCCCCCCTGATCAATAAAGATTAATCTTCGCCGGAAAATAATTAGAA 154835 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| | | ||||||||||| | || ||||| || | ||| | || ||| Sbjct 154836 GATGGAAGAACTTTATCTGATTACAATATCTAAAAAGAATCCACCTTACACTTAGTTTTA 154895 Query 29175 CGATTACGAGGAGG 29188 ||||| ||||||| Sbjct 154896 AGATTAAGAGGAGG 154909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428334496540640