Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq130 100 2e-16 seq249 95.1 1e-14 >seq130 Length=530367 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| |||| ||| ||||||| || || || ||||| ||||| || ||| | | Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | || |||| |||||| || |||||||| | ||| ||||| Sbjct 7004 CGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6945 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 | ||||| | || || || || ||| |||| |||||| | |||| | |||||||||| Sbjct 6944 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 6885 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| |||| ||||| ||||| || | || ||| ||||| ||||||| Sbjct 6884 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGG 6837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || |||||||| | ||| || ||| ||||| | || || || || ||| Sbjct 8798 AAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAATAAAGATTAATTTTCGCTGGAAAA 8857 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 |||| |||||| | |||| | |||||||||||||| |||| ||||| ||||| || Sbjct 8858 TAATTAGAAGATGGAAGAACTTTATCCGATTACAATATTTAAAAAGAATCCACTCTCCAT 8917 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || ||| ||||| ||||||| Sbjct 8918 TTAGTATTAAGATTAAGAGGAGG 8940 >seq249 Length=567749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||||||| |||| ||| ||||||| | || || ||||| || ||| || ||| Sbjct 154678 TAAAAATGTAAATTTTCGTCAAAACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAG 154737 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | | || | | | | |||| ||||| |||||||||||| | ||| | Sbjct 154738 CTTCCGATTCTATCGAAAACGTCAAAGCCAAAATCTAAGATAAAGAAGGTATCCCCCCTG 154797 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 ||||| ||||| | ||||| || || ||| |||| |||||| | |||| | | |||| Sbjct 154798 ATCAATAAAGATTAATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATT 154857 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||| |||| ||||| || | ||| | || ||| ||||| ||||||| Sbjct 154858 ACAATATCTAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 154909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410795358103232