Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq167 132 7e-26 seq130 132 7e-26 seq249 118 2e-21 seq129 105 1e-17 >seq167 Length=324310 Score = 132 bits (146), Expect = 7e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| |||| || | || || |||| || |||||||| ||| | || ||||| | | Sbjct 152721 ATGTAAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCT 152780 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| ||| | ||| |||||| ||||||||||||| || || ||||| ||| Sbjct 152781 GACTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAA 152840 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||| | ||||| || |||||| ||||||| || | |||| ||| || |||||| Sbjct 152841 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAT 152900 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 || |||||||||| ||||| || || |||||| | || |||| ||||| |||| Sbjct 152901 ATCTAAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGAGGAGGTATGTAAA 152955 >seq130 Length=530367 Score = 132 bits (146), Expect = 7e-26 Identities = 179/248 (72%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||| |||| || | || || |||| || |||||||| || |||| ||||| | Sbjct 6836 AATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTC 6777 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | ||| ||| | ||| |||||| |||||||||||||||| || ||||| || Sbjct 6776 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCA 6717 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 | |||| | |||||||| |||||| ||||||| || | |||| ||| |||||||| Sbjct 6716 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTATAA 6657 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || |||||||| || || || ||||| || | ||| |||| || || |||| || Sbjct 6656 CATCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGGAATGTAAATTTT 6597 Query 124777 CATAAAAA 124784 | | |||| Sbjct 6596 CGTCAAAA 6589 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||| |||| || | || || | || || |||||||| ||| |||| ||||| | Sbjct 8941 AATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTC 9000 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | ||| ||| | ||| |||||| ||||||||||||| || || ||||| || Sbjct 9001 TGATTCCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCA 9060 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 | |||| | |||||||| |||||| ||||||| || | |||| ||| |||||||| Sbjct 9061 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAA 9120 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| |||||||| || || || ||||| ||| | ||| |||| || Sbjct 9121 TATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGG 9168 Score = 123 bits (136), Expect = 4e-23 Identities = 192/271 (71%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| |||| || | || || |||| || |||||||| || |||| ||||| || Sbjct 7291 ATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCATCC 7232 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| || | ||| |||||| |||||||||||||||| || ||||| ||| Sbjct 7231 GATTCCATTGAAAACGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAA 7172 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||| | ||||| || |||||| ||||||| || | |||| ||| || |||||| Sbjct 7171 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACTTTATCCGACTATAAT 7112 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || |||||||| || || || || || ||| | ||| |||| || || |||| ||| Sbjct 7111 ATCTAAAAAGAAAGTACCTTACACTTAGTCTTAAGATTAAGAGGAGGAATGTAAATTTTC 7052 Query 124778 ATAAAAA--TTGATTGTAAATAAATATCACT 124806 | |||| || | || ||| || ||| ||| Sbjct 7051 GTCAAAACCTTAACTGGAAA-AACTATTACT 7022 Score = 120 bits (132), Expect = 5e-22 Identities = 192/272 (71%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||| |||| || | || || |||| || ||||| || ||| |||| ||||| | Sbjct 8485 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTC 8544 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| | ||| ||| | ||| |||||| |||||||||||||||| || ||||| || Sbjct 8545 TGATTCCATTGAAAATGTCAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCA 8604 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 | |||| | ||||| || |||||| |||| || || | |||| ||| || ||||| Sbjct 8605 ATAAAGATTAATTTTCGCTGGAAAATAATTGGAAGACGGAAGAACTTTATCCGACTATAA 8664 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||| |||||||| || || || || || || | ||| |||| || || |||| || Sbjct 8665 TATCTAAAAAGAAAGTACCTTACACTTAGTATTGAGATTAAGAGGAGGAATGTAAATTTT 8724 Query 124777 CATAAAAA--TTGATTGTAAATAAATATCACT 124806 | | |||| || | || ||| || ||| ||| Sbjct 8725 CGTTAAAACCTTAACTGGAAA-AACTATTACT 8755 Score = 116 bits (128), Expect = 6e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 124561 TAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAAC 124620 |||| || |||||||| | || | || | || ||||| | ||| || | ||| Sbjct 13657 TAACCGGAAAAACTATTTATTTAAACTTTAATTCATATGATTCCATTGAAAACGTTAAAG 13716 Query 124621 AGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAA 124680 |||||| |||||||||||||||| || ||||| ||| |||| | ||||| || |||| Sbjct 13717 GTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAATAAAGATTAATTTTCGCTGGAA 13776 Query 124681 AACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGC 124740 || ||||||| || | |||| ||| |||||||| ||| |||||||| || || | Sbjct 13777 AAAAATTAGAAGACGGAAGAACTTTATCCGATTATAACATTTAAAAAGAAAGTACCTTAC 13836 Query 124741 ATTTGGTTTTACGTTTACGAGGTGGTA 124767 | ||| | ||| ||||| |||| |||| Sbjct 13837 ACTTGTTATTAAGTTTAAGAGGAGGTA 13863 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||| ||| | | | ||| |||||| ||||||||||||| || || ||||||| Sbjct 10735 ATGATACTATTGAAATTGTCAAAGGTAAAATTTAAGATAAAGAAGGAATTCCCCCTGATC 10794 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 || |||| | ||||| | |||||| ||||||| ||| |||| ||| ||||||| Sbjct 10795 AATAAAGAATAATTTTAGATGGAAAATAATTAGAAGATGAAAGAACTTTATCTGATTATA 10854 Query 124717 ATATTCAAAAAGAA 124730 | ||| |||||||| Sbjct 10855 ACATTTAAAAAGAA 10868 >seq249 Length=567749 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||| |||| || | || || || || || |||||||| || | || | ||||| Sbjct 154682 AATGTAAATTTTCGTCAAAACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAGCTTC 154741 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| | || || | ||| ||||| |||||||||||||||| || |||||||| Sbjct 154742 CGATTCTATCGAAAACGTCAAAGCCAAAATCTAAGATAAAGAAGGTATCCCCCCTGATCA 154801 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 | |||| | || || || |||||| ||||||| ||| | |||| ||| ||||| || Sbjct 154802 ATAAAGATTAATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTACAA 154861 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| |||||||||| || || || || |||||| | ||| |||| || Sbjct 154862 TATCTAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 154909 >seq129 Length=365655 Score = 105 bits (116), Expect = 1e-17 Identities = 117/154 (76%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 124599 GATACAATTTCTAATTTAAAA--CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || |||||| ||||||||| || || ||| || | |||| || | ||| || ||| Sbjct 254801 GACACAATTGAAAATTTAAAAGCCAAAATATTTAA--TGAAGATGGAACACCTCCCGATT 254744 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 || ||||||| |||||||||||||| |||||||| ||| |||| ||| |||| || Sbjct 254743 AATAAAGGCTAATTTTTGCAGGAAAGCAATTAGAAGATGAAAGAACTTTATCTGATTGTA 254684 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| |||||||| || |||||||| ||||| Sbjct 254683 ATATTTAAAAAGAAAGTACCTTGCATTTAGTTTT 254650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453280358400