Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq130 136 6e-27 seq167 123 4e-23 seq249 116 6e-21 >seq130 Length=530367 Score = 136 bits (150), Expect = 6e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||||||||| ||||| | ||| |||||||| | ||||| ||||| | Sbjct 6835 TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGG 6894 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||||| | ||| ||||||| ||||||||| ||||| ||||||| ||||| || | Sbjct 6895 ATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGG 6954 Query 146169 GAATTCCTTCTTTATCTT 146186 ||||||||||||| |||| Sbjct 6955 GAATTCCTTCTTTGTCTT 6972 Score = 134 bits (148), Expect = 2e-26 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||||||||| ||||| | ||| |||||||| | ||||| ||||| | Sbjct 8942 TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGG 8883 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||||| | ||| ||||||| ||||||||| ||||| ||||||| || || || | Sbjct 8882 ATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 8823 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||||||||| |||| || ||| ||| ||| | Sbjct 8822 GAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAA 8763 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 | |||| || || ||||| || ||||| ||||||| ||| |||| |||| Sbjct 8762 CATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| ||||| ||||| ||| |||||| | || |||||||| || Sbjct 6380 TCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGA 6439 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | ||| ||||||| ||||||||| ||||| ||||||| ||||| || || Sbjct 6440 TAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGG 6499 Query 146170 AATTCCTTCTTTATCTT 146186 |||||||||||| |||| Sbjct 6500 AATTCCTTCTTTGTCTT 6516 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| ||||| ||||| ||| |||||| | ||||||||||| || Sbjct 9169 TCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATATTATAATCAGA 9110 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | || ||||||| |||||| |||||||| ||||||| || || || || Sbjct 9109 TAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGG 9050 Query 146170 AATTCCTTCTTTATCTT 146186 ||||||||||||||||| Sbjct 9049 AATTCCTTCTTTATCTT 9033 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| |||||||| ||||| ||| |||||| | || |||||||| | Sbjct 6607 TTCCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAG 6666 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||||| | || ||||||| |||||| |||||||| ||||||| || || || | Sbjct 6667 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGG 6726 Query 146169 GAATTCCTTCTTTATCTT 146186 | || ||||||||||||| Sbjct 6727 GGATACCTTCTTTATCTT 6744 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | |||||| || || ||||| ||| |||||| | |||||||| || | Sbjct 7063 TTCCTCCTCTTAATCTTAAGACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGG 7122 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||||| | || ||||||| ||||||||| ||||| ||||||| || || || | Sbjct 7123 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 7182 Query 146169 GAATTCCTTCTTTATCTT 146186 | || ||||||||||||| Sbjct 7183 GGATACCTTCTTTATCTT 7200 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||||||| ||| ||||| ||| |||||| | || |||||||| || Sbjct 13861 CCTCCTCTTAAACTTAATAACAAGTGTAAGGTACTTTCTTTTTAAATGTTATAATCGGAT 13802 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | || ||||||| ||||||||| ||||| ||||||| || || || || Sbjct 13801 AAAGTTCTTCCGTCTTCTAATTTTTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 13742 Query 146171 ATTCCTTCTTTATCTT 146186 || ||||||||||||| Sbjct 13741 ATACCTTCTTTATCTT 13726 Score = 109 bits (120), Expect = 8e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| ||||| || ||||| ||| |||||| | |||||||| || | Sbjct 8714 TTCCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGG 8655 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||||| | || || |||| ||||||||| ||||| ||||||| || || || | Sbjct 8654 ATAAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 8595 Query 146169 GAATTCCTTCTTTATCTT 146186 | || ||||||||||||| Sbjct 8594 GGATACCTTCTTTATCTT 8577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||| || || | ||| ||| |||||| | || |||||||| || | |||||| ||| Sbjct 10889 TAACACTAAGTATAAGGTACTTTCTTTTTAAATGTTATAATCAGATAAAGTTCTTTCATC 10830 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||||| ||||||| | ||||| | ||||| ||||| || ||||||||||||||||| Sbjct 10829 TTCTAATTATTTTCCATCTAAAATTATTCTTTATTGATCAGGGGGAATTCCTTCTTTATC 10770 Query 146185 TT 146186 || Sbjct 10769 TT 10768 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 146077 TAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTT 146136 ||| ||| |||||| | || |||||||| || | ||||| | || |||||| ||| Sbjct 11564 TAAGGTACTTTCTTTTTAAATGTTATAATCAGATAATGTTCTTCCGTCTTCTAATGATTT 11505 Query 146137 TCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTT 146186 ||| |||||||||||||||| || || || |||||||||||||| |||| Sbjct 11504 TCCGGCAAAAATCAATCTTTATTGGTCAGGGGGAATTCCTTCTTTGTCTT 11455 >seq167 Length=324310 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || || |||||||| |||||||| | |||||||| || || Sbjct 152947 CCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGAT 152888 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | || ||||||| |||||| || ||||| ||||||| || || || ||| Sbjct 152887 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGGA 152828 Query 146171 ATTCCTTCTTTATCTT 146186 |||||||||||||||| Sbjct 152827 ATTCCTTCTTTATCTT 152812 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | |||||| || || |||||||| |||||||| | || ||||| || | Sbjct 153177 TTCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAG 153118 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||||| | || ||||||| |||||| || ||||| ||||||| ||||| || | Sbjct 153117 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGG 153058 Query 146169 GAATTCCTTCTTTATCTT 146186 | ||||||||||| |||| Sbjct 153057 GGATTCCTTCTTTGTCTT 153040 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| || |||||||| || |||||||| | || || ||||| || Sbjct 152719 CCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGAT 152660 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || ||||||| ||||||||| ||||| ||||||| || || || || Sbjct 152659 AAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 152600 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 152599 ATTCCTTCTTTGTCTTG 152583 >seq249 Length=567749 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || || ||||| || |||||||| | ||||| ||||| || Sbjct 154910 TCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGA 154851 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | ||| ||||||| |||||| || || || ||||||| ||||| || || Sbjct 154850 TAAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGG 154791 Query 146170 AATTCCTTCTTTATCTT 146186 || ||||||||||||| Sbjct 154790 GATACCTTCTTTATCTT 154774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743523723304960