Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq141 116 3e-21 >seq141 Length=555024 Score = 116 bits (128), Expect = 3e-21 Identities = 193/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 38351 TACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATG 38410 ||||||| ||||| || || | ||| | || |||||| ||||||| ||| | Sbjct 69088 TACCTTCAATACTATCTTCTTACATTTAAACTAAGAAACAAGAGGACATTTAAGGTTTAG 69147 Query 38411 GAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT--A 38468 | ||||| | ||||||||||||||||| |||||| | |||||||||| ||| || | Sbjct 69148 GTGTTCCAGAGTTAAATAATGTAGGAGTTGCATGAGTAAACCATTTTT--GACTCATCAA 69205 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 | || |||| | |||| |||| |||| |||||| |||| ||| || ||||| Sbjct 69206 CTCGTAAGTTTTAAACACATTTTCTAAATCATTTTTGTGAATTCCTAAAGAAACTCTCAT 69265 Query 38529 TAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTC 38588 || ||||| || ||||| || | ||||| | | | | || | ||| |||||||| Sbjct 69266 TATCATATATTAAGGTCTCTCGACAATTTTTTGGTGAATTCTTAGCAAATAAGATTTTTC 69325 Query 38589 TAATGTTTTTATTCCAAAATAACTATATGAATAATCT 38625 || ||||| | |||||| | ||| | ||||||| Sbjct 69326 CAAAGTTTTAAACCCAAAAAAGTCATAGGTATAATCT 69362 Score = 109 bits (120), Expect = 5e-19 Identities = 179/257 (70%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || |||||||||||||||||||| ||||||| ||| || || ||||||||| || ||| Sbjct 67549 AATTCTCCAGATAATACTCTTCTAGTATATAAATTACTTGTTAATGGTTCAAAAGATTCA 67608 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 |||| | | |||||| |||| ||||| ||||| ||||| | ||| | |||| Sbjct 67609 GTATTTCCCATAATTTGACTTGTACTAGCAGTGGGCATAGGTGCAACTAGCAAAGAATTT 67668 Query 37264 CTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGG 37323 ||||| |||| | || ||| || |||| | | | ||| || || || | |||| Sbjct 67669 CTCAAACCATTAATTTTTATTTACTCCTTTAATCCGTCCCAGTCATATCCATTTCTTGGC 67728 Query 37324 TTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 || | ||||| ||| ||| | | |||| || || ||||| | ||| | || Sbjct 67729 TTATAGTCCCACAGGTCAAATTACAACAAGCCTTCGCTTGCGGGAGAGCCTTTAAAAGTT 67788 Query 37384 TCATAAGGTCC-GTAAA 37399 |||||||| || ||||| Sbjct 67789 TCATAAGGACCTGTAAA 67805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 37696 ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTA 37755 |||||| ||| ||| || ||||| ||||| |||| || | | ||||| || ||| Sbjct 68222 ATAGATGCTAAATTGCAAACAGCCACTTCGTCTTTAGATGTATACTAAATAATTTCAGTA 68281 Query 37756 CAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAA 37815 || | |||| | ||||||||| ||||| ||| |||||| ||| | ||||||| | Sbjct 68282 CATAAATTAGATTGTTAAATTGTTCCTAAATTTTTTTAATTGGACTTTCTGTTACAAGCA 68341 Query 37816 TCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCAT 37875 |||||||||| ||||| || ||||| ||| |||| || |||| || | |||| Sbjct 68342 TCTTTATATAACATATAAGGAGTTCCAGTTTCAATTTAGGCATCGACTATTTCATGCCAT 68401 Query 37876 AAACTTCTTGCTTTAA 37891 || ||| ||||||| Sbjct 68402 AATTGTCTAGCTTTAA 68417 Score = 91.5 bits (100), Expect = 1e-13 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 || |||||| | || || | |||||| || ||||| ||| ||| |||| | ||||| Sbjct 68668 TTTCATAAAGAGGTCTGGGATCCATAAAGCGTAAAATAGGTCTCTGGCTCTAAAATCTTC 68727 Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141 || || ||| || ||||| || |||||| || | ||||||||||| || |||| Sbjct 68728 CTTTCCATGATTTTTCCTTAATTATAAAAAATCAAAAACGTCAGCGTGCCAAGGCTCTAA 68787 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 ||| || | | | ||| ||| || | ||||| | || || |||||| | || | Sbjct 68788 ATACATAGCGAAAGACCCTTTTCTCTTTCCTCCTCCTTAATCAACGTATCTAGCGGTATC 68847 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 |||||| | | | | |||||| | || || || || | ||||| |||| ||||| Sbjct 68848 ATTATAAACTTTAAGCATAGGAATAATTCCGTTTGAAATACCGTTCGTACCTTTAATATA 68907 Query 38262 AGTACCCTTAGCTCGTAT 38279 || | | || |||| ||| Sbjct 68908 AGAATCTTTGGCTCTTAT 68925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523113310720