Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq141 93.3 6e-14 seq232 91.5 2e-13 >seq141 Length=555024 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 65187 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 65246 ||||||||||| |||||||| | ||| || | |||||| || | ||||| | ||| ||| Sbjct 67549 AATTCTCCAGATAATACTCTTCTAGTATATAAATTACTTGTTAATGGTTCAAAAGATTCA 67608 Query 65247 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 65306 ||||||||| ||||||| || ||||| ||||||||||| || | ||| |||| Sbjct 67609 GTATTTCCCATAATTTGACTTGTACTAGCAGTGGGCATAGGTGCAACTAGCAAAGAATTT 67668 Query 65307 CTAAGACCGTATGTTCTGATTTTATCTTTTA 65337 || | ||| | || | |||| || |||| Sbjct 67669 CTCAAACCATTAATTTTTATTTACTCCTTTA 67699 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | |||||||| ||||||| || || ||||||||||||| | | | | | Sbjct 69150 GTTCCAGAGTTAAATAATGTAGGAGTTGCATGAGTAAACCATTTTTGACTCATCAACTCG 69209 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | || | |||| ||| || |||||||||| | || | ||||| | Sbjct 69210 TAAGTTTTAAACACATTTTCTAAATCATTTTTGTGAATTCCTAAAGAAACTCTCATTATC 69269 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 || | | |||||| || || || || | || ||| | | ||| || |||||||||||| Sbjct 69270 ATATATTAAGGTCTCTCGACAATTTTTTGGTGAATTCTTAGCAAATAAGATTTTTCCAAA 69329 Query 66636 GTTTTAAAACCAAAATAGT 66654 |||||||| |||||| ||| Sbjct 69330 GTTTTAAACCCAAAAAAGT 69348 >seq232 Length=78669 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| | ||| || || || | |||||| || ||||||||||| |||| ||| || | Sbjct 21547 TTTCTAGTAATCTCCAACTCTTTTTTCAAAGAAATTAGTTTTTCCTTATAAACTAATCAT 21606 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| ||||||| ||||| | ||||||||| ||| | |||||| || | | Sbjct 21607 ATCCATCCAATCGAAAGGATTTTTTACATTATAATATTTAGGAGCTCCCAAAACAAACAA 21666 Query 35986 CAATCTATCTGCGACAAATTCTATATAT 36013 |||||||| ||||||||||| |||||| Sbjct 21667 TAATCTATCAGCGACAAATTCAATATAT 21694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170430577920