Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq141 102 1e-16 seq232 87.8 3e-12 >seq141 Length=555024 Score = 102 bits (112), Expect = 1e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | |||||||| ||||||| || || ||||||||||||| | || | | | Sbjct 69150 GTTCCAGAGTTAAATAATGTAGGAGTTGCATGAGTAAACCATTTTTGACTCATCAACTCG 69209 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | || | ||||| ||| || |||||||||| | || | ||||| | Sbjct 69210 TAAGTTTTAAACACATTTTCTAAATCATTTTTGTGAATTCCTAAAGAAACTCTCATTATC 69269 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || | | |||||| || || || || | | ||| | | ||| ||||||||||||||| Sbjct 69270 ATATATTAAGGTCTCTCGACAATTTTTTGGTGAATTCTTAGCAAATAAGATTTTTCCAAA 69329 Query 80515 GTTTTAAAACCAAAATAGT 80533 |||||||| |||||| ||| Sbjct 69330 GTTTTAAACCCAAAAAAGT 69348 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 79066 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCA 79125 ||||||||||| |||||||| | ||| || | |||||| || ||||||| | |||||| Sbjct 67549 AATTCTCCAGATAATACTCTTCTAGTATATAAATTACTTGTTAATGGTTCAAAAGATTCA 67608 Query 79126 TTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTT 79185 ||||||||| ||||||| || || || ||||||||||| || | ||| |||| Sbjct 67609 GTATTTCCCATAATTTGACTTGTACTAGCAGTGGGCATAGGTGCAACTAGCAAAGAATTT 67668 Query 79186 CTAAGACC 79193 || | ||| Sbjct 67669 CTCAAACC 67676 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||||||||||| || || ||||| | ||| |||||| ||||||| |||| || || Sbjct 68668 TTTCATAAAGAGGTCTGGGATCCATAAAGCGTAAAATAGGTCTCTGGCTCTAAAATCTTC 68727 Query 80004 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 80063 ||||| ||| || | | | | || | | || |||| ||||| || || || Sbjct 68728 CTTTCCATGATTTTTCCTTAATTATAAAAAATCAAAAACGTCAGCGTGCCAAGGCTCTAA 68787 Query 80064 GTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 80123 || || || | | || || || |||||| | ||| | |||||||||||| | Sbjct 68788 ATACATAGCGAAAGACCCTTTTCTCTTTCCTCCTCCTTAATCAACGTATCTAGCGGTATC 68847 Query 80124 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCC 80174 |||||||||| | | ||| |||||||| || || || |||| || || || Sbjct 68848 ATTATAAACTTTAAGCATAGGAATAATTCCGTTTGAAATACCGTTCGTACC 68898 >seq232 Length=78669 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| | ||| || || || | |||||| || |||||||||||||||| || || | Sbjct 21547 TTTCTAGTAATCTCCAACTCTTTTTTCAAAGAAATTAGTTTTTCCTTATAAACTAATCAT 21606 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| |||| || ||||| | ||||||||| ||| | |||||| || | | Sbjct 21607 ATCCATCCAATCGAAAGGATTTTTTACATTATAATATTTAGGAGCTCCCAAAACAAACAA 21666 Query 49788 CAATCTATCCGCGACAAATTCTATATAT 49815 |||||||| ||||||||||| |||||| Sbjct 21667 TAATCTATCAGCGACAAATTCAATATAT 21694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266214232320