Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq232 105 6e-18 >seq232 Length=78669 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 14063 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122 |||||||| ||| |||||||| ||||| || | |||||||| | || || | || | Sbjct 22729 TACCATCAGAAGCCGCAAAAAAAGCCAAAATATACTTAATAAAATGTTATTCCCCCTTAT 22788 Query 14123 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182 | || |||| ||| || | | |||| || ||| || | |||||| || |||||||||| Sbjct 22789 TAAGCTTTTCCCAGTCTTTTTAGTCCTAAGCAAGGTCAATTTCATCTACAGTCCAAAAAC 22848 Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14242 | || | ||| ||||| | |||| || | || ||| ||||||||| | |||| Sbjct 22849 TGGCCATTTATTTCTTATAAGCTTCCCAAATCTAATTGTATTTTATAGGAAATAAAACAA 22908 Query 14243 ATC-TTGAAGATGTTTCTTTAAGAATT 14268 ||| |||| ||| ||||||| | |||| Sbjct 22909 ATCTTTGAGGAT-TTTCTTTCAAAATT 22934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/234 (69%), Gaps = 9/234 (4%) Strand=Plus/Plus Query 13291 TTTATAATATT-TAATAAAAACT------AAAAATCAACATCTAATGAAAAAACATTATC 13343 ||| ||||||| || ||||||| | ||||| |||| ||||||||||||||| Sbjct 21463 TTTTTAATATTATATTAAAAACCCTACTCAGAAATCTTCATCCAATGAAAAAACATTAGA 21522 Query 13344 GTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTT 13403 ||||| || |||| ||| | || || | ||||||||||||||| || || Sbjct 21523 CTCTTTTCCCCCAACAACGTTAGCTTTCTAGTAATCTCCAACTCTTTTTTCAAAGAAATT 21582 Query 13404 AGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACA-TAAACA 13462 |||||| |||| | || | ||||| ||||||| |||||| || ||| || | Sbjct 21583 AGTTTTTCCTTATAAACTAATCATATCCATCCAATCGAAAGGATTT-TTTACATTATAAT 21641 Query 13463 CTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATT 13516 |||| | || | | || |||||||||||||| | ||| |||||||||| Sbjct 21642 ATTTAGGAGCTCCCAAAACAAACAATAATCTATCAGCGACAAATTCAATATATT 21695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587077080320