Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq130 102 6e-17 seq167 100 2e-16 >seq130 Length=530367 Score = 102 bits (112), Expect = 6e-17 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | | |||||| || ||||||| |||| || |||| | |||||||||||| Sbjct 6837 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 6896 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || || |||| ||| || || ||||| |||| | |||||| | || Sbjct 6897 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGA 6956 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || ||||||| | ||| | ||| || || || Sbjct 6957 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAACA 7016 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT----TTCTTAAT 43118 |||| || ||||||||||| |||| ||||| || ||||||| |||| ||||||| Sbjct 7017 TCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATTCCTCCTCTTAAT 7076 Query 43119 TTTA 43122 ||| Sbjct 7077 CTTA 7080 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | | |||||| || ||||||| |||| || |||| | |||||||||||| Sbjct 8940 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 8881 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || || |||| ||| || || ||||| |||| | ||| || | || Sbjct 8880 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGA 8821 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || ||||||| | ||| | || || || || Sbjct 8820 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAACA 8761 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| |||| ||||| || ||||||| |||| Sbjct 8760 TCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 >seq167 Length=324310 Score = 100 bits (110), Expect = 2e-16 Identities = 177/257 (69%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || |||||| || ||||| | ||| || |||| | |||||||| || Sbjct 152719 CCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGAT 152660 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| || |||| ||| || || ||||| |||| | ||| || | || Sbjct 152659 AAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 152600 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| ||||||| | ||| | ||| | |||||| Sbjct 152599 ATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGACG 152540 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTA 43122 || | || || ||||||||||||| ||||| || || |||| |||||| ||| |||| Sbjct 152539 TCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATTTT-TTATTTTTT 152481 Query 43123 TTTGTACACTTTGTTTT 43139 | | || |||||||| Sbjct 152480 TATTTATTTTTTGTTTT 152464 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || |||||| || || || | |||| || |||| | ||| || || || Sbjct 152947 CCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGAT 152888 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| || |||| ||| ||||| ||||| |||| | ||| || | || Sbjct 152887 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGGA 152828 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || |||| || | ||| | ||| || || || Sbjct 152827 ATTCCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAACA 152768 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||||||||||| |||||| || ||||||| ||| Sbjct 152767 TCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368261392704