Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq141 98.7 1e-15 >seq141 Length=555024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| | |||||||| ||||||| || || ||||||||||||| | || | | | Sbjct 69150 GTTCCAGAGTTAAATAATGTAGGAGTTGCATGAGTAAACCATTTTTGACTCATCAACTCG 69209 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || | || | ||||| ||| || || ||||||| | || | ||||| | Sbjct 69210 TAAGTTTTAAACACATTTTCTAAATCATTTTTGTGAATTCCTAAAGAAACTCTCATTATC 69269 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 |||| | |||||| || || || || | | ||| | | ||| || |||||||||||| Sbjct 69270 ATATATTAAGGTCTCTCGACAATTTTTTGGTGAATTCTTAGCAAATAAGATTTTTCCAAA 69329 Query 72598 GTTTTAAAACCAAAATAGT 72616 |||||||| |||||| ||| Sbjct 69330 GTTTTAAACCCAAAAAAGT 69348 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 71149 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCA 71208 ||||||||||| |||||||| | ||| || | |||||| || | ||||| | || ||| Sbjct 67549 AATTCTCCAGATAATACTCTTCTAGTATATAAATTACTTGTTAATGGTTCAAAAGATTCA 67608 Query 71209 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTT 71268 ||||||||| ||||||| || ||||| ||||||||||| || | | | |||| Sbjct 67609 GTATTTCCCATAATTTGACTTGTACTAGCAGTGGGCATAGGTGCAACTAGCAAAGAATTT 67668 Query 71269 CTAAGACCAT 71278 || | ||||| Sbjct 67669 CTCAAACCAT 67678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136783898880