Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq167 96.9 2e-15 seq249 93.3 3e-14 seq130 86.0 4e-12 >seq167 Length=324310 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | || || ||||| || || || ||||||| || ||||||||||| Sbjct 152720 ACCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGA 152661 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | ||| || |||| |||||| || ||||| | || ||||| | ||| Sbjct 152660 TAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGG 152601 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || | | | || ||| || ||| ||| | ||| || || Sbjct 152600 GATTCCTTCTTTGTCTTGGATTTTAGC---TTTGACGTTTTCAATAGAGTCAGAGGATTC 152544 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||||||| ||| || |||||||| || | ||||| ||||| |||| ||| ||| Sbjct 152543 GACGTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATTTTT 152489 >seq249 Length=567749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| | || || || || || || || ||||||| |||||||||||||| Sbjct 154909 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGAT 154850 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || || |||| ||||| || ||||| | || || || | ||| Sbjct 154849 AAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGGG 154790 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || |||||||| || | | | || ||| || ||| || | ||| | || Sbjct 154789 ATACCTTCTTTATCTTAGATTTTGGC---TTTGACGTTTTCGATAGAATCGGAAGCTTCG 154733 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGTT 33379 ||||| || || || ||||| || ||||| ||||| |||||||||| ||| ||||| || Sbjct 154732 ACGTCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTGACGAAAATTTACATTTTTATTTTT 154673 Query 33380 AAT 33382 ||| Sbjct 154672 AAT 154670 >seq130 Length=530367 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| | || || ||||| | || || ||||||| ||||||||||| || Sbjct 6837 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 6896 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || || |||| |||||| || ||||| | || || || | ||| Sbjct 6897 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGA 6956 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| ||| || ||| ||| | ||| | || ||| Sbjct 6957 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAACA 7016 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| || |||||||| || | ||||| |||||||||| ||| Sbjct 7017 TCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 7063 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| | || || ||||| | || || ||||||| ||||||||||| || Sbjct 8940 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 8881 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 ||| | | || || |||| |||||| || ||||| | || ||||| | ||| Sbjct 8880 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGA 8821 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| ||| || ||| ||| | || | || ||| Sbjct 8820 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAACA 8761 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| || |||||||| || | ||||| |||||||||| ||| Sbjct 8760 TCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACAT 8714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776481090624