Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq130 122 6e-23 seq167 105 5e-18 seq249 86.0 4e-12 >seq130 Length=530367 Score = 122 bits (134), Expect = 6e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 43887 ATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTAT 43946 ||||| | |||||||| |||||||| ||||| |||| || || ||||||| ||||||| Sbjct 9176 ATCATTATCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATATTAT 9117 Query 43947 AATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGT 44006 |||| ||| | | || || |||| |||||| ||||| || || | || |||| Sbjct 9116 AATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGT 9057 Query 44007 CCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCG 44066 | | || | |||||||||||| ||||||| |||||| | ||| | ||| | | Sbjct 9056 CAGGGGGAATTCCTTCTTTATCTTAAATTTTGGCTTTGACATTTTCAATGGAATCAGAGG 8997 Query 44067 GCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | ||||| ||||| || || ||||| || || || |||| ||| Sbjct 8996 ATTCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAACGAAAATTTACAT 8942 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| ||||| || ||||| |||| || || ||||||| || |||||||| | Sbjct 6609 CCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGAT 6668 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | | || || |||| |||||| ||||| || || | || ||||| | || Sbjct 6669 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGGG 6728 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| ||||||| ||| || | ||| | ||| | | || || Sbjct 6729 ATACCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAACG 6788 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| |||||||| || || || || |||| ||| Sbjct 6789 TCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 6835 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || || |||| || || ||||||| |||||||| ||| | Sbjct 7065 CCTCCTCTTAATCTTAAGACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGGAT 7124 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | | || || |||| |||||| || || || || | || ||||| | || Sbjct 7125 AAAGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 7184 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| ||||||| ||| || | ||| | ||| | | || || Sbjct 7185 ATACCTTCTTTATCTTAAATTTTAGCTTTAACGTTTTCAATGGAATCGGATGATTCAACG 7244 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| |||||||| || || || || |||| ||| Sbjct 7245 TCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 7291 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| ||||| || || || |||| || || ||||||| |||||||| ||| | Sbjct 8712 CCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGGAT 8653 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | | || ||||||| |||||| || || || || | || ||||| | || Sbjct 8652 AAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 8593 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| ||||||| |||||| | ||| | ||| | | || || Sbjct 8592 ATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCAGAAGATTCAACG 8533 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || ||||| || || || || |||| ||| Sbjct 8532 TCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 8486 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| || ||||| | ||| |||| || || ||||||| ||| ||||||||| Sbjct 13862 ACCTCCTCTTAAACTTAATAACAAGTGTAAGGTACTTTCTTTTTAAATGTTATAATCGGA 13803 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | | || || |||| |||||| || || || || | || ||||| | || Sbjct 13802 TAAAGTTCTTCCGTCTTCTAATTTTTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGG 13743 Query 44014 TACACCTTCTTTATCTGAAATTTT 44037 | ||||||||||||| ||||||| Sbjct 13742 GATACCTTCTTTATCTTAAATTTT 13719 >seq167 Length=324310 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||||||||| || || |||| ||| ||||||| |||||||| || Sbjct 152948 ACCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGA 152889 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | | || || |||| |||||| || || || || | || ||||| | || Sbjct 152888 TAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGG 152829 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||||||| ||| || | ||| | || | | || || Sbjct 152828 AATTCCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAAC 152769 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | ||||| ||||| ||||||||||| || || || |||| ||| Sbjct 152768 ATCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||||||||| || ||||||| ||| ||||||| ||| || ||||| Sbjct 152720 ACCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGA 152661 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | | || || |||| |||||| || || || || | || ||||| | || Sbjct 152660 TAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGG 152601 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||||| |||||| | ||| || || | | || || Sbjct 152600 GATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGAC 152541 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| |||||||| || || || || |||| ||| Sbjct 152540 GTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACAT 152493 >seq249 Length=567749 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||||||| || || |||| ||| ||||||| ||||| ||||| | Sbjct 154909 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGAT 154850 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || |||| |||||| || || || || | || || || | || Sbjct 154849 AAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGGG 154790 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| | ||||| |||||| | | | || ||| | | || || Sbjct 154789 ATACCTTCTTTATCTTAGATTTTGGCTTTGACGTTTTCGATAGAATCGGAAGCTTCGACG 154730 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| ||||| | || || || || |||| ||| Sbjct 154729 TCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTGACGAAAATTTACAT 154683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776354730624