Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq130 125 6e-24 seq167 107 2e-18 >seq130 Length=530367 Score = 125 bits (138), Expect = 6e-24 Identities = 188/266 (71%), Gaps = 1/266 (0%) Strand=Plus/Plus Query 19945 AATTTTATTATAAAATTTAAA-TATATTTTATCATTTTCCTCCTCGTAACCTCAACACCA 20003 || |||||| |||| | ||| | |||| |||||| |||||||| ||| || || |||| Sbjct 6343 AAATTTATTTTAAAGTAAAAAGTTTATTCAATCATTATCCTCCTCTTAATCTTAAGACCA 6402 Query 20004 AATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATT 20063 | |||| ||| |||||||| ||||| ||||| | |||| | |||||| |||| Sbjct 6403 AGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGATAAAGTTCTTCCATCTTCTAATT 6462 Query 20064 GTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTT 20123 ||| || || |||| | || | |||||| ||| | ||||||||||| ||||| Sbjct 6463 ATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGAATTCCTTCTTTGTCTTAAATTT 6522 Query 20124 TTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGG 20183 | ||| || | ||| ||||| || ||| || | ||||||||||| || | Sbjct 6523 TAGCTTTAACATTTTCAATGGAATCAGAAGATTCAACGTCTAAAGTAATGGTTTTTCCAG 6582 Query 20184 TCAACGTTTTGACAAAAATTTGCATT 20209 | || |||||||| ||||||| |||| Sbjct 6583 TTAAGGTTTTGACGAAAATTTACATT 6608 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| ||| || || || ||||| || || |||||||||| || ||||||||| Sbjct 6835 TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGG 6894 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||| |||| ||| || || |||| | || | |||||| || Sbjct 6895 ATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGG 6954 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| ||| || | ||| ||||||| || ||| Sbjct 6955 GAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAA 7014 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||||| ||||| || || || |||||||| ||||||| |||| Sbjct 7015 CATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 7064 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| ||| || || || ||||| || || |||||||||| || ||||||||| Sbjct 8942 TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGG 8883 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||| |||| ||| || || |||| | || | ||| || || Sbjct 8882 ATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 8823 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| ||| || | ||| |||||| || ||| Sbjct 8822 GAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAA 8763 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||||| ||||| || || || ||||| || ||||||| |||| Sbjct 8762 CATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 Score = 105 bits (116), Expect = 6e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| ||| ||||| || || |||| ||| |||||||| || || || ||| Sbjct 8714 TTCCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGG 8655 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||||| ||| || || |||| | || | ||| || || Sbjct 8654 ATAAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 8595 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || |||||| ||| || | ||| ||||| || ||| Sbjct 8594 GGATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCAGAAGATTCAA 8535 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAA 20215 || | ||||||||||| || || || |||||||| ||||||| |||||||||| Sbjct 8534 CGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATTTTTAAA 8479 >seq167 Length=324310 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| ||| || || || || |||| || |||||||||| ||||| || || Sbjct 153177 TTCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAG 153118 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | ||||| |||| ||| || || |||| | || | ||||||| || Sbjct 153117 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGG 153058 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| ||| || | ||| ||| || || ||| Sbjct 153057 GGATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAA 152998 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || |||||||| || || || |||||||||||||||| ||| Sbjct 152997 CGTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || || || || ||||||| || |||||||||| ||||||||||| Sbjct 152719 CCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGAT 152660 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||| |||| ||| || || |||| | || | ||| || ||| Sbjct 152659 AAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 152600 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||| || | ||| ||| || | ||| Sbjct 152599 ATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGACG 152540 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 |||| || |||||||| ||||| || ||||| || || |||| ||||||| Sbjct 152539 TCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATTTTT 152489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419585727248928