Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq249 123 2e-23 seq167 123 2e-23 seq130 107 2e-18 >seq249 Length=567749 Score = 123 bits (136), Expect = 2e-23 Identities = 177/249 (71%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 94762 TTTTTTAAAATTTTACA---CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 |||||| ||||| || |||||||||| |||| || || ||||| || || ||||| Sbjct 154931 TTTTTTTTAATTTACCATTCCTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTC 154872 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | || ||||| | ||| | ||| || | | ||||||| | ||||| Sbjct 154871 TTTTTAGATATTGTAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGAT 154812 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 |||||||| ||||| || || ||||||||||| || || ||||| || |||||| | Sbjct 154811 TAATCTTTATTGATCAGGGGGGATACCTTCTTTATCTTAGATTTTGGCTTTGACGTTTTC 154752 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || || || | |||||||||| ||||| ||||| || ||||| ||||| || || Sbjct 154751 GATAGAATCGGAAGCTTCGACGTCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTGACGAA 154692 Query 94999 GATCTGCAT 95007 || | ||| Sbjct 154691 AATTTACAT 154683 >seq167 Length=324310 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||| |||| || || ||||| ||||| ||||| |||| | |||||| || Sbjct 153176 TCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGA 153117 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| | || || | | ||||||| | || |||||||||| ||||| || || Sbjct 153116 TAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGG 153057 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||||||||| |||||||| || || || | | || ||||| || || Sbjct 153056 GATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAAC 152997 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| | ||||||||||||||||| | |||||| ||||| || | ||| Sbjct 152996 GTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 Score = 111 bits (122), Expect = 1e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| ||||||||||||| || || || || || || ||||| |||| | | Sbjct 152731 AAAATTTACATACCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATG 152672 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| | || | || || | | |||||| | || |||||||||| Sbjct 152671 TTGTAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTAT 152612 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || || || ||||||||||| | ||||| || |||||| | | || |||| Sbjct 152611 TGGTCAGGGGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCA 152552 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | |||||||| | |||||||||||||| || | ||||| || ||||| | ||| Sbjct 152551 GAGGATTCGACGTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACAT 152493 Score = 100 bits (110), Expect = 3e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| |||||| ||||||||||||| || || ||||| ||||| ||||| |||| | Sbjct 152960 AAAAATTTACATACCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGAT 152901 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||| || | ||| | || || | | ||||||| | || |||||||||| Sbjct 152900 ATTATAGTCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTA 152841 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || ||||| |||||||| || |||||||| || || || | | | ||| Sbjct 152840 TTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAGTC 152781 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || |||||||| || | |||||| || || || | ||| Sbjct 152780 AGAAGATTCAACATCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 >seq130 Length=530367 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| ||||||||| |||| ||| |||||||| || ||| ||| |||| | | Sbjct 6597 AAAATTTACATTCCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATG 6656 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| | ||| | || || | | ||||||| |||| |||||||||| Sbjct 6657 TTATAATCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTAT 6716 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || || || || ||||||||||| || |||||||| || || || Sbjct 6717 TGGTCAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTAAC 6760 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| ||||||||| |||| ||| || ||||| || ||| ||| |||| | Sbjct 8724 AAAATTTACATTCCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATA 8665 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| ||| | ||| | || |||| | |||||| | || |||||||||| Sbjct 8664 TTATAGTCGGATAAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTAT 8605 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || || ||||||||||| || |||||||| || ||||| | | | ||| Sbjct 8604 TGGTCAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCA 8545 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| | || |||||||||||||| | ||||| || || || | ||| Sbjct 8544 GAAGATTCAACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 8486 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||| |||| || |||||||| || ||| ||| |||| | ||||||||| Sbjct 6380 TCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGA 6439 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| | ||| || | | |||||| | || |||||||||| ||||| || || Sbjct 6440 TAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGG 6499 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||||||||| |||||||| || || || | | | |||| || || Sbjct 6500 AATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAAC 6559 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| | || |||||||||||||| | ||||| || || || | ||| Sbjct 6560 GTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 6607 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| ||||||||| |||| || || || || | ||| ||||| |||| | Sbjct 6825 AAAATTTACATTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATA 6884 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||| | ||| | ||| || | | |||||| | || |||||||||| Sbjct 6885 TTGTAATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTAT 6944 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || ||||| ||||||||||| |||||||| || ||||| | | || || Sbjct 6945 TGATCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCG 7004 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || ||||||||||| | ||||| || || || | ||| Sbjct 7005 GAAGATTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 7063 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| ||||||||| |||| || || || || | ||| ||||| |||| | Sbjct 8952 AAAATTTACATTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATA 8893 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || |||||| | ||| | ||| || | | |||||| | || |||||||||| Sbjct 8892 TTGTAATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTAT 8833 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| |||||||| || ||||| | | || ||| Sbjct 8832 TGGTCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCA 8773 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || ||||||||||| | ||||| || || || | ||| Sbjct 8772 GAAGATTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACAT 8714 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 ||||||| | | ||||||||| |||| || |||||||| || ||| ||| |||| Sbjct 9183 TTAAAATATCATTATCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAG 9124 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | |||||||| | || | || || | | ||||||| |||| ||||||||| Sbjct 9123 ATATTATAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTT 9064 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 | || || || ||||| |||||||| || |||||||| || ||||| | | | Sbjct 9063 TATTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTTGGCTTTGACATTTTCAATGGAA 9004 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| | || || || | || || ||||||||||| | |||||| || || || | | Sbjct 9003 TCAGAGGATTCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAACGAAAATTTAC 8944 Query 95006 AT 95007 || Sbjct 8943 AT 8942 Score = 86.0 bits (94), Expect = 6e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| ||||||||| |||| || || ||||| || ||| ||| |||| | Sbjct 7053 AAAATTTACATTCCTCCTCTTAATCTTAAGACTAAGTGTAAGGTACTTTCTTTTTAGATA 7112 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| ||| | ||| | || || | | |||||| | || |||||||||| Sbjct 7113 TTATAGTCGGATAAAGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTAT 7172 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || || || || ||||||||||| || |||||||| || || ||| Sbjct 7173 TGGTCAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTAACG 7217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289586151680