Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq141 102 1e-16 seq232 82.4 1e-10 >seq141 Length=555024 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 63221 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 |||||||||||| || || ||||| | ||| |||||| ||||||| |||| || || Sbjct 68668 TTTCATAAAGAGGTCTGGGATCCATAAAGCGTAAAATAGGTCTCTGGCTCTAAAATCTTC 68727 Query 63281 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63340 ||||| ||| || | | | | || | | || |||| ||||| || || || Sbjct 68728 CTTTCCATGATTTTTCCTTAATTATAAAAAATCAAAAACGTCAGCGTGCCAAGGCTCTAA 68787 Query 63341 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63400 || || || | | || | || |||||| | ||| | |||||||||||| | Sbjct 68788 ATACATAGCGAAAGACCCTTTTCTCTTTCCTCCTCCTTAATCAACGTATCTAGCGGTATC 68847 Query 63401 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63451 |||||||||| | | ||| |||||||| |||||||| ||||| || ||||| Sbjct 68848 ATTATAAACTTTAAGCATAGGAATAATTCCGTTTGAAATACCGTTCGTACC 68898 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | |||||||| ||||||| || || ||||||||||||| | | | | | Sbjct 69150 GTTCCAGAGTTAAATAATGTAGGAGTTGCATGAGTAAACCATTTTTGACTCATCAACTCG 69209 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | || | |||| ||| || |||||||||| | || | ||||| | Sbjct 69210 TAAGTTTTAAACACATTTTCTAAATCATTTTTGTGAATTCCTAAAGAAACTCTCATTATC 69269 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 || | | |||||| || || || || | || ||| | | ||| || |||||||||||| Sbjct 69270 ATATATTAAGGTCTCTCGACAATTTTTTGGTGAATTCTTAGCAAATAAGATTTTTCCAAA 69329 Query 63792 GTTTTAAAACCAAAATAGT 63810 |||||||| |||||| ||| Sbjct 69330 GTTTTAAACCCAAAAAAGT 69348 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 62343 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62402 ||||||||||| |||||||| | ||| || | |||||| || | ||||| | || ||| Sbjct 67549 AATTCTCCAGATAATACTCTTCTAGTATATAAATTACTTGTTAATGGTTCAAAAGATTCA 67608 Query 62403 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62462 ||||||||| ||||||| || ||||| ||||||||||| || | ||| |||| Sbjct 67609 GTATTTCCCATAATTTGACTTGTACTAGCAGTGGGCATAGGTGCAACTAGCAAAGAATTT 67668 Query 62463 CTAAGACCGTATGTTCTGATTTTATCTTTTA 62493 || | ||| | || | |||| || |||| Sbjct 67669 CTCAAACCATTAATTTTTATTTACTCCTTTA 67699 >seq232 Length=78669 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| | ||| || || || | |||||| || |||||||||||||||| || || | Sbjct 21547 TTTCTAGTAATCTCCAACTCTTTTTTCAAAGAAATTAGTTTTTCCTTATAAACTAATCAT 21606 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| |||| || ||||| | ||||||||| ||| | |||||| || | | Sbjct 21607 ATCCATCCAATCGAAAGGATTTTTTACATTATAATATTTAGGAGCTCCCAAAACAAACAA 21666 Query 33132 CAATCTATCCGCGACGAATTCTATATAT 33159 |||||||| ||||| ||||| |||||| Sbjct 21667 TAATCTATCAGCGACAAATTCAATATAT 21694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944957390080