Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq130 122 7e-23 seq167 118 9e-22 >seq130 Length=530367 Score = 122 bits (134), Expect = 7e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||| || | || || ||||| |||||||||||| | ||||| | || || || | Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| | || || | |||||| || ||| ||||||||||| || || || ||||| Sbjct 7004 CGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6945 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 | | ||| | |||| || || || || | ||||||| |||| | |||||| || Sbjct 6944 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 6885 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 ||| |||||||||| || | |||||||| |||||||| ||||||||| | ||| Sbjct 6884 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAATGTAA 6830 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||| || | || || ||||| |||||||||||| | ||||| | || || || | Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | || || | |||||| || ||| ||||||||||| || || || || || Sbjct 8773 TGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCA 8832 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 | | ||| | |||| || || || || | ||||||| |||| | |||||| || Sbjct 8833 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 8892 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 ||| |||||||||| || | |||||||| |||||||| ||||||||| | ||| Sbjct 8893 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAATGTAA 8947 Score = 111 bits (122), Expect = 1e-19 Identities = 171/241 (71%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||| || | || || ||||| |||||||||||| | ||||| | || || || | Sbjct 6608 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTC 6549 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || |||| || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 6548 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6489 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 | | ||| | |||| || || || || | ||||||| |||| | | | | ||||||| Sbjct 6488 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAA-CTTTATCTGATTATA 6430 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGAT 24228 |||| |||||||| ||| | || || || |||||||| |||||||| |||||||| Sbjct 6429 ACATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGG---ATAATGAT 6373 Query 24229 T 24229 | Sbjct 6372 T 6372 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| || | || || ||||| |||||||||||| | ||||| | || || || | Sbjct 8483 AAAATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCT 8542 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||| || | |||||| || ||| || |||||||| || || || || Sbjct 8543 TCTGATTCCATTGAAAATGTCAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGAC 8602 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||| | ||| | |||| || || || || | ||||| | |||| | ||| ||| Sbjct 8603 CAATAAAGATTAATTTTCGCTGGAAAATAATTGGAAGACGGAAGAACTTTATCCGACTAT 8662 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 || || |||||||| ||| | || ||||| || ||||| ||||||||| | ||| Sbjct 8663 AATATCTAAAAAGAAAGTACCTTACACTTAGTATTGAGATTAAGAGGAGGAATGTAA 8719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||| || | || || ||||| ||||| |||||| | |||||| | || || || | Sbjct 6836 AATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTC 6777 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || |||| || | || ||| || ||| || |||||||| || || || || || Sbjct 6776 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCA 6717 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 | | ||| | |||| | ||| || || | ||||| | |||| | | | | ||||||| Sbjct 6716 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAA-CTTTATCTGATTATA 6658 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 |||| |||||||| ||| | || || || || ||||| ||||||||| | ||| Sbjct 6657 ACATCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGGAATGTAA 6602 >seq167 Length=324310 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| || | || || ||||| ||||| |||||| | || || | || ||||| || Sbjct 152490 AAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCC 152549 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||| | || || | |||||| || || ||||||||||| || || || || Sbjct 152550 TCTGACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGAC 152609 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||| | ||| | |||| || || || || | ||||| | |||| | | ||||| Sbjct 152610 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTAC 152669 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| |||||||||| || | |||||||| ||||||||||||||||| Sbjct 152670 AACATTTAAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGAGGAGG 152719 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | ||||| ||||| |||||||||||| | || || | || || || | Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | || ||| || ||| ||||||||||| || || ||||||||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAA 153068 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 | ||| | |||| || ||| || || | ||||| | || ||| | | | || ||||| Sbjct 153069 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAG-AACTTTATCTGACTATAA 153127 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||||| || | || ||||| |||||||| ||||||||| Sbjct 153128 CATCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGA 153176 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || || ||||| ||||| |||||| | ||||| | || || || | Sbjct 152721 ATGTAAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCT 152780 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| |||| || | || ||| || ||| || |||||||| || || || || ||| Sbjct 152781 GACTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAA 152840 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 | ||| | |||| || ||| || || | ||||| | |||| | | | | || ||||| Sbjct 152841 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAA-CTTTATCTGACTATAA 152899 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||||| || | || ||||| ||||||||||||||||| Sbjct 152900 TATCTAAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGAGGAGG 152947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934490924640