Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq130 134 9e-27 seq167 105 4e-18 seq249 100 2e-16 >seq130 Length=530367 Score = 134 bits (148), Expect = 9e-27 Identities = 172/233 (74%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| || | || || ||||| |||||| || |||| ||||||||||| Sbjct 6833 CATT-CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAAT 6891 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || ||| | | | || ||||||| |||||| || || |||| | || |||||| | Sbjct 6892 CGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAG 6951 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTT 38264 ||| | |||||||||| | ||| |||| || || ||||| | | || ||| | | Sbjct 6952 GGGGAATTCCTTCTTTGT-CTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGAT 7010 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||| ||||||||||| || || |||||||| ||||| || | ||| Sbjct 7011 TCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 7063 Score = 131 bits (144), Expect = 1e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| || | ||| ||||| || | || || || |||| || || |||| Sbjct 6605 CATT-CCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAAT 6663 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| ||| | | |||| ||||||| |||||||||||| |||| | || ||| || | Sbjct 6664 CAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAG 6723 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTT 38264 ||||| |||||||| | | ||| |||| || || ||||| | | | ||| | | Sbjct 6724 GGGGGATACCTTCTTTAT-CTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGAT 6782 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||| ||||||||||| || || |||||||| ||||| || | ||| Sbjct 6783 TCAACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 6835 Score = 131 bits (144), Expect = 1e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| || | || || ||||| |||||| || |||| ||||||||||| Sbjct 8944 CATT-CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAAT 8886 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || ||| | | | || ||||||| |||||| || || |||| | || ||| || | Sbjct 8885 CGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAG 8826 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTC-ACATTCTGGACAGTATCTCCACTT 38264 ||| | ||||||||||| ||| |||| |||| ||||| | | || ||| | | Sbjct 8825 GGGGAATTCCTTCTTTGTCT-TAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGAT 8767 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||| ||||||||||| || || |||||||| ||||| || | ||| Sbjct 8766 TCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACAT 8714 Score = 122 bits (134), Expect = 6e-23 Identities = 174/241 (72%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 38079 ATCCAATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAAT 38137 || ||||||||| || ||||| || | || ||||| || | || || || |||| || Sbjct 6368 ATTCAATCATTATCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGAT 6427 Query 38138 ATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTG 38197 || |||||||| ||| | | | || ||||||| |||||| || || |||| | || Sbjct 6428 GTTATAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTA 6487 Query 38198 TTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTAT 38256 |||||| | ||| | |||||||||| | ||| |||| || || ||||| | | | || Sbjct 6488 TTGATCAGGGGGAATTCCTTCTTTGT-CTTAAATTTTAGCTTTAACATTTTCAATGGAAT 6546 Query 38257 CTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 | | |||||| ||||| ||||| ||||| || || |||||||| ||||| || | || Sbjct 6547 CAGAAGATTCAACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACA 6606 Query 38317 T 38317 | Sbjct 6607 T 6607 Score = 122 bits (134), Expect = 6e-23 Identities = 171/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 38084 ATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 ||||||| || ||||| || | || ||||| || | || || || |||| ||||| | Sbjct 9176 ATCATTATCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATATTAT 9117 Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 ||||||| || | | |||| ||||||| |||||||||||| |||| | || ||| | Sbjct 9116 AATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGT 9057 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCA 38261 | | ||| | |||||||| | | ||| |||| || || ||||| | | | ||| Sbjct 9056 CAGGGGGAATTCCTTCTTTAT-CTTAAATTTTGGCTTTGACATTTTCAATGGAATCAGAG 8998 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| ||||| ||||||||||| || ||||| ||||| ||||| || | ||| Sbjct 8997 GATTCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAACGAAAATTTACAT 8942 Score = 104 bits (114), Expect = 2e-17 Identities = 168/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| || | || || || || | || || || |||| ||||| || | Sbjct 7061 CATT-CCTCCTCTTAATCTTAAGACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGT 7119 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || ||| | | |||| ||||||| |||||| || || |||| | || ||| || | Sbjct 7120 CGGATAAAGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAG 7179 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCA-CATTCTGGACAGTATCTCCACTT 38264 ||||| |||||||| || ||| |||| |||| | | || | | | ||| | Sbjct 7180 GGGGGATACCTTCTTTATCT-TAAATTTTAGCTTTAACGTTTTCAATGGAATCGGATGAT 7238 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 ||||| ||||| ||||||||||| || || |||||||| ||||| || | ||| |||| Sbjct 7239 TCAACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACATATTTT 7296 >seq167 Length=324310 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | || || || || | |||| || |||| ||||| || |||| Sbjct 152949 TACCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAG 152890 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| | | |||| ||||||| ||||||||| || |||| | || ||| || | || Sbjct 152889 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGG 152830 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCA-CATTCTGGACAGTATCTCCACTTTCA 38267 | | |||||||| || ||| |||| |||| | |||| | | | || | |||| Sbjct 152829 GAATTCCTTCTTTATCT-TAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCA 152771 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||||||||| || || || ||||| ||||| || | ||| Sbjct 152770 ACATCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || | || || || || | |||| || |||| || || || ||||| Sbjct 153175 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGAT 153116 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| | | |||| ||||||| ||||||||| || |||| | || |||||||| |||| Sbjct 153115 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGGG 153056 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||||| | ||| |||| || || ||||| | | || || | |||||| Sbjct 153055 ATTCCTTCTTTGT-CTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAAC 152997 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| || || || ||||| || || || | ||| Sbjct 152996 GTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | || || ||||| | ||| || |||| ||| |||||||||| Sbjct 152721 TACCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAG 152662 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | | |||| ||||||| |||||| || || |||| | || ||| || | || Sbjct 152661 ATAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 152602 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| || || || | | || || ||| | Sbjct 152601 GGATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGA 152542 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || || || || ||||| || || |||||||| ||||| || | ||| ||||| Sbjct 152541 CGTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATTTTTTA 152487 >seq249 Length=567749 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || | || || || || | ||| || |||| |||||||||||||| Sbjct 154909 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGAT 154850 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| | | | || ||||||| ||||||||| || |||| | || |||||| | |||| Sbjct 154849 AAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGGG 154790 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||| | | || |||| || || || || | || || ||| | ||| || Sbjct 154789 ATACCTTCTTTAT-CTTAGATTTTGGCTTTGACGTTTTCGATAGAATCGGAAGCTTCGAC 154731 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || |||||||| || || | |||||| ||||| || | ||| ||| Sbjct 154730 GTCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTGACGAAAATTTACATTTTT 154679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946024335328