Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq141 98.7 1e-15 seq232 91.5 2e-13 >seq141 Length=555024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | |||||||| ||||||| || |||||||||||||||| | | | | | Sbjct 69150 GTTCCAGAGTTAAATAATGTAGGAGTTGCATGAGTAAACCATTTTTGACTCATCAACTCG 69209 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | || | |||| ||| || |||||||||| | || | ||||| | Sbjct 69210 TAAGTTTTAAACACATTTTCTAAATCATTTTTGTGAATTCCTAAAGAAACTCTCATTATC 69269 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 || | | |||||| || || || || | || ||| | | ||| || |||||||||||| Sbjct 69270 ATATATTAAGGTCTCTCGACAATTTTTTGGTGAATTCTTAGCAAATAAGATTTTTCCAAA 69329 Query 63647 GTTTTAAAACCAAAATAGT 63665 |||||||| |||||| ||| Sbjct 69330 GTTTTAAACCCAAAAAAGT 69348 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 62198 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 62257 ||||||||||| |||||||| | ||| || | |||||| || | ||||| | ||| ||| Sbjct 67549 AATTCTCCAGATAATACTCTTCTAGTATATAAATTACTTGTTAATGGTTCAAAAGATTCA 67608 Query 62258 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62317 ||||||||| ||||||| || ||||| ||||||||||| || | ||| |||| Sbjct 67609 GTATTTCCCATAATTTGACTTGTACTAGCAGTGGGCATAGGTGCAACTAGCAAAGAATTT 67668 Query 62318 CTAAGACCGTATGTTCTGATTTTATCTTTTA 62348 || | ||| | || | |||| || |||| Sbjct 67669 CTCAAACCATTAATTTTTATTTACTCCTTTA 67699 Score = 86.0 bits (94), Expect = 8e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 63076 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 |||||||||||| || || ||||| | ||| |||||| ||||||| |||| || || Sbjct 68668 TTTCATAAAGAGGTCTGGGATCCATAAAGCGTAAAATAGGTCTCTGGCTCTAAAATCTTC 68727 Query 63136 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63195 ||||| ||| || | | | | || | | || |||| ||||| || || || Sbjct 68728 CTTTCCATGATTTTTCCTTAATTATAAAAAATCAAAAACGTCAGCGTGCCAAGGCTCTAA 68787 Query 63196 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 || || || | | || | || |||||| | ||| | |||||||||||| | Sbjct 68788 ATACATAGCGAAAGACCCTTTTCTCTTTCCTCCTCCTTAATCAACGTATCTAGCGGTATC 68847 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 |||||||||| | | ||| |||||||| || || || |||| || || ||| ||||| Sbjct 68848 ATTATAAACTTTAAGCATAGGAATAATTCCGTTTGAAATACCGTTCGTACCTTTAATATA 68907 >seq232 Length=78669 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| | ||| || || || | |||||| || ||||||||||| |||| ||| || | Sbjct 21547 TTTCTAGTAATCTCCAACTCTTTTTTCAAAGAAATTAGTTTTTCCTTATAAACTAATCAT 21606 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| ||||||| ||||| | ||||||||| ||| | |||||| || | | Sbjct 21607 ATCCATCCAATCGAAAGGATTTTTTACATTATAATATTTAGGAGCTCCCAAAACAAACAA 21666 Query 32489 CAATCTATCTGCGACAAATTCTATATAT 32516 |||||||| ||||||||||| |||||| Sbjct 21667 TAATCTATCAGCGACAAATTCAATATAT 21694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629718924800