Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq130 141 8e-29 seq167 129 5e-25 seq249 113 4e-20 >seq130 Length=530367 Score = 141 bits (156), Expect = 8e-29 Identities = 173/234 (74%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| |||| || || || || || || || ||| | || || | || || || || || Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| |||| || |||| |||| |||| | | ||||||||||| ||||| |||| Sbjct 8773 TGATTCTATTGAAAATGTCA---AAGCTAAAATTTAA-GACAAAGAAGGAATTCCCCCTG 8828 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||| | | | ||||| || || ||| |||||||||||| | ||| | ||||| Sbjct 8829 ACCAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATT 8888 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| ||||||||||||| || |||||||| |||| |||||||||||| Sbjct 8889 ACAATATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAA 8942 Score = 132 bits (146), Expect = 4e-26 Identities = 171/234 (73%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| |||| || || || || || || || ||| | || || | || || || || || Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || |||| || |||| |||| |||| | | ||||||||||| ||||| |||| Sbjct 7004 CGATTCTATTGAAAATGTCA---AAGCTAAAATTTAA-GACAAAGAAGGAATTCCCCCTG 6949 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||| | | | ||||| || || ||| |||||||||||| | ||| | ||||| Sbjct 6948 ATCAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATT 6889 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| ||||||||||||| || |||||||| |||| |||||||||||| Sbjct 6888 ACAATATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAA 6835 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| |||| || || || |||||||| || ||| | || || | || || || || || Sbjct 8941 AATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTC 9000 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| | || || |||| |||| |||| | | || |||||||| ||||| |||| Sbjct 9001 TGATTCCATTGAAAATGTCA---AAGCCAAAATTTAA-GATAAAGAAGGAATTCCCCCTG 9056 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||| | | | ||||||||||| ||| |||||||||| | | || | |||| Sbjct 9057 ACCAATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATT 9116 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 | ||||| |||||||| || |||| || || |||| ||||||||||| Sbjct 9117 ATAATATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGGA 9169 Score = 93.3 bits (102), Expect = 4e-14 Identities = 167/240 (70%), Gaps = 7/240 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| |||| || || || || || || || ||| |||| || | || || || || || Sbjct 6608 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTC 6549 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | || || | || |||| |||| | | ||||||||||| ||||| ||||| Sbjct 6548 TGATTCCATTGAA--AATGTTAAAGCTAAAATTTAA-GACAAAGAAGGAATTCCCCCTGA 6492 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| | | | ||||| || || ||| |||||||||||| | ||| | ||||| Sbjct 6491 TCAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTA 6432 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA-AATTATT 25233 || || |||||||| || |||| || || |||| ||||||||||| ||| ||| Sbjct 6431 TAACATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGGATAATGATT 6372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| |||| || || || || || ||||| ||| | || || | || || || || || Sbjct 6836 AATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTC 6777 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | || || | || |||| |||| | | || |||||||| || || ||||| Sbjct 6776 TGATTCCATTGAA--AATGTTAAAGCTAAAATTTAA-GATAAAGAAGGTATCCCCCCTGA 6720 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||| | | | ||||||||||| ||| |||||||||| | | ||| | ||||| Sbjct 6719 CCAATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTA 6660 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || |||||||| || |||| || || | || |||||||||||| Sbjct 6659 TAACATCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGGAA 6607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| || || || || || ||||| ||| | || || | || || || || || Sbjct 7291 ATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCATCC 7232 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | || || | | |||| |||| | | || |||||||| || || |||||||| Sbjct 7231 GATTCCATTGAAAACGTTAAAGCTAAAATTTAA-GATAAAGAAGGTATCCCCCCTGACCA 7173 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 | | | | ||||| || || ||| |||||||||| | | ||| | ||| || || Sbjct 7172 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACTTTATCCGACTATAA 7113 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| |||||||| || |||| ||||| |||| |||||||||||| Sbjct 7112 TATCTAAAAAGAAAGTACCTTACACTTAGTCTTAAGATTAAGAGGAGGAA 7063 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||| |||| || || || || || || || ||| |||| || | || || || || Sbjct 8482 AAAAATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATC 8541 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 ||||| | || || |||| |||| |||| | | || |||||||| || || | Sbjct 8542 TTCTGATTCCATTGAAAATGTCA---AAGCTAAAATTTAA-GATAAAGAAGGTATCCCCC 8597 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 |||||||| | | | ||||| || || ||| |||| ||||| | | ||| | || Sbjct 8598 CTGACCAATAAAGATTAATTTTCGCTGGAAAATAATTGGAAGACGGAAGAACTTTATCCG 8657 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| |||||||| || |||| ||||| | || |||||||||||| Sbjct 8658 ACTATAATATCTAAAAAGAAAGTACCTTACACTTAGTATTGAGATTAAGAGGAGGAA 8714 >seq167 Length=324310 Score = 129 bits (142), Expect = 5e-25 Identities = 171/235 (73%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||| |||| || || || || || ||||| ||| ||||||| | || || || || Sbjct 152489 AAAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATC 152548 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 |||||| |||| || |||| |||| |||| || ||||||||||| || || | Sbjct 152549 CTCTGACTCTATTGAAAACGTCA---AAGCTAAAATCCAA-GACAAAGAAGGAATCCCCC 152604 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 |||||||| | | | ||||| || || ||| |||||||||| | | || | | Sbjct 152605 CTGACCAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTG 152664 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| ||| ||||||||||||| |||||||||| |||| | |||||||| Sbjct 152665 ATTACAACATTTAAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGAGGAGG 152719 Score = 118 bits (130), Expect = 9e-22 Identities = 169/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| ||||| || ||||| || || ||| ||||||| | || || || || ||| Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| |||| || | || |||| |||| | | ||||||||||| || || || || Sbjct 153009 GACTCTATTGAA--AATGTTAAAGCTAAAATTTAA-GACAAAGAAGGAATCCCCCCCGAT 153065 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||| | | | ||||| ||||| ||| |||||||||| | | ||| | || || Sbjct 153066 CAATAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTAT 153125 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 || || ||||||||||||| |||| ||||| |||| |||||||||||| || Sbjct 153126 AACATCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGAATTT 153180 Score = 109 bits (120), Expect = 5e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| || || || ||||| ||||| ||| | || || | || || || || ||| Sbjct 152721 ATGTAAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCT 152780 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| | || || | || |||| |||| | | || |||||||| ||||| |||||| Sbjct 152781 GACTCCATTGAA--AATGTTAAAGCTAAAATTTAA-GATAAAGAAGGAATTCCCCCTGAC 152837 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||| | | | ||||| ||||| ||| |||||||||| | | ||| | || || Sbjct 152838 CAATAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTAT 152897 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||||||||||| |||| ||||| |||| | |||||||| Sbjct 152898 AATATCTAAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGAGGAGG 152947 >seq249 Length=567749 Score = 113 bits (124), Expect = 4e-20 Identities = 168/236 (71%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||| |||| || || || || | ||||| ||| | ||||| | || || || | Sbjct 154679 AAAAATGTAAATTTTCGTCAAAACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAGC 154738 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || || ||||||| |||| |||| |||| || || |||||||| || || | Sbjct 154739 TTCCGATTCTATCGAAAACGTCA---AAGCCAAAA-TCTAAGATAAAGAAGGTATCCCCC 154794 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 |||| ||| | | | || || ||||| ||| |||||||||||| | ||| | | Sbjct 154795 CTGATCAATAAAGATTAATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACTTTATCTG 154854 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||||||| ||||||||||||| |||| ||||| |||| ||||||||||| Sbjct 154855 ATTACAATATCTAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGA 154910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326479018720