Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq130 114 1e-20 seq167 95.1 1e-14 >seq130 Length=530367 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||| ||||||| |||||||| | || || ||||| ||||| | || ||| | Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||||||| ||| | || ||| |||||| ||||||||||| ||||| ||||| Sbjct 7004 CGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6945 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 | |||| | |||| || || ||| |||| |||||| | |||| | ||||||| || Sbjct 6944 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 6885 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTT 111398 ||| |||||||||| || || |||||||| || Sbjct 6884 TATTTAAAAAGAATCCACTCTCCATTTAGTATT 6852 Score = 100 bits (110), Expect = 2e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 |||||||||| ||||||| |||||||| | || || ||||||||||| | || || Sbjct 8479 TTTAAAAATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGA 8538 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 | | ||||| ||| | || ||| |||||| || |||||||| | ||| Sbjct 8539 ATCTTCTGATTCCATTGAAAATGTCAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCC 8598 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111359 || ||| |||| | |||| || || ||| |||||||||| | |||| | |||| Sbjct 8599 TGACCAATAAAGATTAATTTTCGCTGGAAAATAATTGGAAGACGGAAGAACTTTATCCGA 8658 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 |||||||| |||||||| ||| |||| ||||| ||| Sbjct 8659 CTATAATATCTAAAAAGAAAGTACCTTACACTTAGTATTG 8698 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||| ||||||| || ||||| | || || ||||| ||||| | || ||| | Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 |||||| ||| | || ||| |||||| ||||||||||| ||||| || || Sbjct 8773 TGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCA 8832 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 | |||| | |||| || || ||| |||| |||||| | |||| | ||||||| || Sbjct 8833 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 8892 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTT 111398 ||| |||||||||| || || |||||||| || Sbjct 8893 TATTTAAAAAGAATCCACTCTCCATTTAGTATT 8925 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||| ||||||| |||||||| | || || ||||||||||| | || ||| | Sbjct 6608 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTC 6549 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||||| ||| | || ||| |||||| ||||||||||| ||||| ||||| Sbjct 6548 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6489 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 | |||| | |||| || || ||| |||| |||||| | |||| | | |||||||| Sbjct 6488 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAA 6429 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || |||||||| ||| |||| || || || Sbjct 6428 CATCTAAAAAGAAAGTACCTTACACTTGGTCTT 6396 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||| ||||||| || ||||| |||| || ||||| ||||| | || ||| || Sbjct 8941 AATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTC 9000 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||||| ||| | || ||| |||||| || |||||||| ||||| || || Sbjct 9001 TGATTCCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCA 9060 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 | |||| | |||| ||| || ||| |||| ||||| | ||| | | |||||||| Sbjct 9061 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAA 9120 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTT 111398 ||| |||||||| ||| |||| || || || Sbjct 9121 TATCTAAAAAGAAAGTACCTTACACTTGGTCTT 9153 >seq167 Length=324310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||| |||||||||||||||| | || || |||||||| || |||| ||| | Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || ||| ||| | || ||| |||||| ||||||||||| | ||| ||||||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAA 153068 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||| | |||| || || ||| |||| ||||| | |||| | | || ||||| Sbjct 153069 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAC 153128 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || |||||||||| || |||| ||||| || Sbjct 153129 ATCTAAAAAGAATCCACTTTACACTTAGTCTT 153160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||| |||| || || ||||| | ||||| |||||||| || |||| ||| | Sbjct 152489 AAAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATC 152548 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 | || ||| ||| | || ||| ||||| ||||||||||| | ||| || Sbjct 152549 CTCTGACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGA 152608 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||| |||| | |||| || || ||| |||| ||||| | ||| | | ||||| Sbjct 152609 CCAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTA 152668 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || || |||||||||| || |||||||||| || Sbjct 152669 CAACATTTAAAAAGAATCCACCTTACATTTAGTCTT 152704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423038515129600