Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq167 134 1e-26 seq249 125 6e-24 seq130 125 6e-24 >seq167 Length=324310 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| |||| || |||||||| |||||||| ||||| ||||| | || || ||| | Sbjct 152489 AAAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATC 152548 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | || | | || | ||||| ||||| |||||||| || || || || || || Sbjct 152549 CTCTGACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGA 152608 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || | | || || || || ||| | ||||| || | ||| | || ||||| Sbjct 152609 CCAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTA 152668 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| |||||||||||||| |||||||||| || ||||| | |||||| Sbjct 152669 CAACATTTAAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGAGGAGGT 152720 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||| ||||||||||||||||| ||||| | ||| | || || ||| | | Sbjct 152721 ATGTAAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCT 152780 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||| |||| || || || ||||| || || ||| Sbjct 152781 GACTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAA 152840 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| ||| | ||||| || | || | || || || || Sbjct 152841 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAT 152900 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||||| |||| |||||||| ||||| | |||||| Sbjct 152901 ATCTAAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGAGGAGGT 152948 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||||||||| ||||||||||| || ||||| ||||| | || || ||| | | Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | ||| |||||| ||||||| || || || || ||||||||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAA 153068 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| ||| | ||||| || | || | || || || ||| Sbjct 153069 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAC 153128 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||||| |||| ||||| || |||| | ||||| Sbjct 153129 ATCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 153175 >seq249 Length=567749 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||| ||||||| || ||||| | ||||| ||||| |||| ||||| || ||| Sbjct 154678 TAAAAATGTAAATTTTCGTCAAAACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAG 154737 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | ||||| | | || | ||||| ||||| |||| || || ||||| || || | Sbjct 154738 CTTCCGATTCTATCGAAAACGTCAAAGCCAAAATCTAAGATAAAGAAGGTATCCCCCCTG 154797 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 ||||| || | | || || ||||| ||| | ||||| ||| | || | || |||| Sbjct 154798 ATCAATAAAGATTAATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATT 154857 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| || |||||||||||||| |||| |||||||| |||| | ||||| Sbjct 154858 ACAATATCTAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 154909 >seq130 Length=530367 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||| || ||||| ||||| || ||||| | ||| | || || ||| | || Sbjct 7063 ATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCC 7004 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || ||||| |||||| ||||||| || || ||||| || |||||| Sbjct 7003 GATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAA 6944 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||| | ||||| ||| | || | ||||||||||| Sbjct 6943 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAAT 6884 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| ||||||||||||| | |||||||| || |||| | ||||| Sbjct 6883 ATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGG 6837 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||| |||||||| ||||| || ||||| | ||| | || || ||| | | Sbjct 8714 ATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCT 8773 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || ||||| |||||| ||||||| || || ||||| || || ||| Sbjct 8774 GATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAA 8833 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||| | ||||| ||| | || | ||||||||||| Sbjct 8834 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAAT 8893 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| ||||||||||||| | |||||||| || |||| | ||||| Sbjct 8894 ATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGG 8940 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||| ||||||||||| || || ||||| | ||| | || || ||| || | Sbjct 8942 ATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTCT 9001 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || || ||||| |||||| |||| || || || ||||| || || ||| Sbjct 9002 GATTCCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAA 9061 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| ||| | ||||| || | ||| | || ||||| || Sbjct 9062 TAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAAT 9121 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||| ||| |||| || || || |||| | ||||| Sbjct 9122 ATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGG 9168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726526754720