Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq167 141 2e-28 seq130 136 7e-27 seq249 132 9e-26 >seq167 Length=324310 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| ||||| ||||||| ||||| ||||| || | || || || ||| Sbjct 152704 AAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGATAAGGTTCTTCCGTCT 152645 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| | || || ||||| || | ||||| |||||| || || || ||||| |||||| Sbjct 152644 TCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGGATTCCTTCTTTGTCT 152585 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || || || || |||||| || || | ||| | ||||| || ||||| ||||||||| Sbjct 152584 TGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGACGTCCAAAGTGATGGTT 152525 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || | ||| || ||||| || | |||| Sbjct 152524 TTTCCGGTTAAGGTTTTAACGAAGATTTACATT 152492 Score = 140 bits (154), Expect = 6e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 || || ||||||| | | | || || ||||||| ||||| ||||||| |||||||| Sbjct 153183 TTCAAATTCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTAT 153124 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || | || || || |||||||| | || |||||||| || | ||||| ||| | Sbjct 153123 AGTCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGAT 153064 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 |||| || || ||||| ||||||| ||| || || || || || || | ||| | | Sbjct 153063 CGGGGGGGATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAG 153004 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || ||||| |||||||||||||| || | || ||||| || || | ||| Sbjct 153003 ATTCAACGTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 >seq130 Length=530367 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || |||||||||| || ||||||| |||||||||||| || | || || |||||| Sbjct 6396 AAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGATAAAGTTCTTCCATCT 6455 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| | || || ||||| || | ||||| ||| || || ||||| ||||| |||||| Sbjct 6456 TCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGAATTCCTTCTTTGTCT 6515 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 | ||| || || || || || |||| || | ||||| || || || || |||||| Sbjct 6516 TAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAACGTCTAAAGTAATGGTT 6575 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || | ||| |||||||| || | |||| Sbjct 6576 TTTCCAGTTAAGGTTTTGACGAAAATTTACATT 6608 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| ||||||| | | | |||||||||||||| || ||||||| |||||||| Sbjct 6601 TTTACATTCCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTAT 6660 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 |||| || | || || || |||||||| | || ||||| || || | ||||| ||||| Sbjct 6661 AATCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGT 6720 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || || ||||| || |||| ||| || || || || || |||| || | | Sbjct 6721 CAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAG 6780 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || ||||| || |||||||| || | ||| || ||||| || | |||| Sbjct 6781 ATTCAACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACATT 6836 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| ||||||| | | | ||||| || || || ||||| ||||||| || || | Sbjct 6829 TTTACATTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGT 6888 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 ||||||| | || || ||||||||||| | || || ||||| || | ||||| ||| | Sbjct 6889 AATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGAT 6948 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || ||||| ||||| ||||||| ||| || || ||||| || || | || | | Sbjct 6949 CAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAG 7008 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || || || || |||||||| || | ||| |||||||| || | |||| Sbjct 7009 ATTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 7064 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| ||||||| | | | ||||| || || || ||||| ||||||| || || | Sbjct 8948 TTTACATTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGT 8889 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 ||||||| | || || ||||||||||| | || || ||||| || | ||||| ||||| Sbjct 8888 AATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGT 8829 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || ||||| ||||| ||||||| ||| || || ||||| || || | || | | Sbjct 8828 CAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAG 8769 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || || || || |||||||| || | ||| || ||||| || | |||| Sbjct 8768 ATTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| ||||||| | | | |||||| ||||||| || ||||||| ||| |||| Sbjct 8720 TTTACATTCCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTAT 8661 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||||| | || || || ||||| || | || || ||||| || | ||||| ||||| Sbjct 8660 AGTCGGATAAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGT 8601 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || || ||||| || |||| ||| || || ||||| || |||| || | | Sbjct 8600 CAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCAGAAG 8541 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || || || || ||||||||||| || | ||| |||||||| || | |||| Sbjct 8540 ATTCAACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 8485 Score = 89.7 bits (98), Expect = 9e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 |||| |||||||| || ||||||| |||||||||||||| | || || || ||| Sbjct 13846 AATAACAAGTGTAAGGTACTTTCTTTTTAAATGTTATAATCGGATAAAGTTCTTCCGTCT 13787 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| | || || ||||| || | ||||| |||||| || || || ||||| || ||| Sbjct 13786 TCTAATTTTTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGGATACCTTCTTTATCT 13727 Query 68370 TGAATCTTTGCCTT 68383 | ||| ||| |||| Sbjct 13726 TAAAT-TTTACCTT 13714 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 ||||||| ||||||||||| || | ||| || || |||||||| || ||||| || Sbjct 11554 TCTTTTTAAATGTTATAATCAGATAATGTTCTTCCGTCTTCTAATGATTTTCCGGCAAAA 11495 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 || | ||||| |||||| || ||||| ||||| ||||||| ||| || || || || Sbjct 11494 ATCAATCTTTATTGGTCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTTAC 11439 >seq249 Length=567749 Score = 132 bits (146), Expect = 9e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| ||||| ||||||| ||| || ||||| || | || || |||||| Sbjct 154894 AAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGATAAAGTTCTTCCATCT 154835 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| | || |||||||| || | ||||| ||| || || || || ||||| || ||| Sbjct 154834 TCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGGGATACCTTCTTTATCT 154775 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 | || || || |||||| ||||| | || | | ||| || || | |||||| ||| Sbjct 154774 TAGATTTTGGCTTTGACGTTTTCGATAGAATCGGAAGCTTCGACGTCAAGGGTGATAGTT 154715 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || ||||| |||||||| || | |||| Sbjct 154714 TTCCCGGTAAGGGTTTTGACGAAAATTTACATT 154682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619082159360