Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015
-11-24] 288 sequences; 55,455,357 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq167 102 7e-17
seq130 93.3 4e-14
>seq167
Length=324310
Score = 102 bits (112), Expect = 7e-17
Identities = 166/238 (70%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204
||||||| |||| || | | ||| || |||||||||| || |||||||||| |||||
Sbjct 152728 ATTTACA--TACCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGT 152671
Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264
||||||| | || | ||||| | || ||| |||||| | || | | | ||
Sbjct 152670 TGTAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATT 152611
Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324
|||| || || || ||||||||||| || || ||| | | ||||| | ||| |
Sbjct 152610 GGTCAGGGGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAG 152551
Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||||||||||||| || | ||||| ||||| | ||||| || || || | |||
Sbjct 152550 AGGATTCGACGTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACAT 152493
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209
||||| || || | || ||| || ||||| |||| || |||||||||| ||||| ||
Sbjct 153181 CAAATTCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAG 153122
Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269
|| | ||| | ||||| | || ||| || ||| | || | | | ||| ||
Sbjct 153121 TCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCG 153062
Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGA 114328
|| || || ||||||||||| ||| ||| | |||| | | ||||| | ||| | ||
Sbjct 153061 GGGGGGATTCCTTCTTTGTCTTAAAT-TTTAGCTTTAACATTTTCAATAGAGTCAGAAGA 153003
Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| ||||||| || | ||||| || || | |||||| |||||||| | |||
Sbjct 153002 TTCAACGTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949
>seq130
Length=530367
Score = 93.3 bits (102), Expect = 4e-14
Identities = 164/238 (69%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204
||||||| | || || | || ||| || |||||||| | || |||||||||| ||| |
Sbjct 6828 ATTTACA--TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATAT 6885
Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264
|||||||| | ||| | |||||| | || ||| |||||| | || | | | ||
Sbjct 6886 TGTAATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATT 6945
Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324
| || || ||||| ||||||||||| ||| || ||| | | ||||| | ||||
Sbjct 6946 GATCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGG 7005
Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||| || || | || | ||||| || || | ||||| || ||||| | |||
Sbjct 7006 AAGATTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 7063
Score = 93.3 bits (102), Expect = 4e-14
Identities = 164/238 (69%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204
||||||| | || || | || ||| || |||||||| | || |||||||||| ||| |
Sbjct 8949 ATTTACA--TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATAT 8892
Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264
|||||||| | ||| | |||||| | || ||| |||||| | || | | | ||
Sbjct 8891 TGTAATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATT 8832
Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324
|||| || ||||| ||||||||||| ||| || ||| | | ||||| | || |
Sbjct 8831 GGTCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAG 8772
Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||| || || | || | ||||| || || | ||||| || ||||| | |||
Sbjct 8771 AAGATTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACAT 8714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420132925328256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |