Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq167 102 7e-17 seq130 93.3 4e-14 >seq167 Length=324310 Score = 102 bits (112), Expect = 7e-17 Identities = 166/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||||||| |||| || | | ||| || |||||||||| || |||||||||| ||||| Sbjct 152728 ATTTACA--TACCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGT 152671 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 ||||||| | || | ||||| | || ||| |||||| | || | | | || Sbjct 152670 TGTAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATT 152611 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 |||| || || || ||||||||||| || || ||| | | ||||| | ||| | Sbjct 152610 GGTCAGGGGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAG 152551 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||||||||| || | ||||| ||||| | ||||| || || || | ||| Sbjct 152550 AGGATTCGACGTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACAT 152493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||||| || || | || ||| || ||||| |||| || |||||||||| ||||| || Sbjct 153181 CAAATTCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAG 153122 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || | ||| | ||||| | || ||| || ||| | || | | | ||| || Sbjct 153121 TCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCG 153062 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGA 114328 || || || ||||||||||| ||| ||| | |||| | | ||||| | ||| | || Sbjct 153061 GGGGGGATTCCTTCTTTGTCTTAAAT-TTTAGCTTTAACATTTTCAATAGAGTCAGAAGA 153003 Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| ||||||| || | ||||| || || | |||||| |||||||| | ||| Sbjct 153002 TTCAACGTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 >seq130 Length=530367 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||||||| | || || | || ||| || |||||||| | || |||||||||| ||| | Sbjct 6828 ATTTACA--TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATAT 6885 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 |||||||| | ||| | |||||| | || ||| |||||| | || | | | || Sbjct 6886 TGTAATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATT 6945 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 | || || ||||| ||||||||||| ||| || ||| | | ||||| | |||| Sbjct 6946 GATCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGG 7005 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || | || | ||||| || || | ||||| || ||||| | ||| Sbjct 7006 AAGATTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 7063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||||||| | || || | || ||| || |||||||| | || |||||||||| ||| | Sbjct 8949 ATTTACA--TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATAT 8892 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 |||||||| | ||| | |||||| | || ||| |||||| | || | | | || Sbjct 8891 TGTAATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATT 8832 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 |||| || ||||| ||||||||||| ||| || ||| | | ||||| | || | Sbjct 8831 GGTCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAG 8772 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || | || | ||||| || || | ||||| || ||||| | ||| Sbjct 8771 AAGATTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACAT 8714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132925328256