Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq249 141 2e-28 seq130 127 5e-24 seq167 114 3e-20 >seq249 Length=567749 Score = 141 bits (156), Expect = 2e-28 Identities = 166/222 (75%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| |||||| || || | | || | ||| |||||||||| |||||| ||||| Sbjct 154874 TTCTTTTTAGATATTGTAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAA 154815 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | | | |||| | ||||| ||||||||||| | |||||| ||||| ||||| Sbjct 154814 GATTAATCTTTATTGATCAGGGGGGATACCTTCTTTATCTTAGATTTTGGCTTTGACGTT 154755 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| ||||||||| | ||| || || || ||||| || |||||||| || || ||||| Sbjct 154754 TTCGATAGAATCGGAAGCTTCGACGTCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTGAC 154695 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAATGTAT 288503 ||| || | ||| | ||||| | | |||| ||| || ||| Sbjct 154694 GAAAATTTACAT--TTTTATTTTTA-ATTTACAATTATTTAT 154656 >seq130 Length=530367 Score = 127 bits (140), Expect = 5e-24 Identities = 167/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || |||||||||| |||||||||||||| | || | |||||||||||||| |||||| Sbjct 7095 GTACTTTCTTTTTAGATATTATAGTCGGATAAAGTTCTTCCGTCTTCTAATTATTTTCCA 7154 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||| || | | | ||| | ||||| ||||||||||| | ||||| ||||| Sbjct 7155 GCGAAAATTAATCTTTATTGGTCAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTA 7214 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 |||||||| || |||||| ||||| || || | || || || || ||||| | || Sbjct 7215 ACGTTTTCAATGGAATCGGATGATTCAACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTT 7274 Query 288457 TTGACGAATATCTGCA---TTATGTTATT-CTAA-TATTTTTAATAAT 288499 || ||||| || | || || | ||||| | || ||||||| |||| Sbjct 7275 TTAACGAAAATTTACATATTTTTTTTATTGCGAATTATTTTTTTTAAT 7322 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || |||||||||| |||||||||||||| | || | ||||||||| |||| |||||| Sbjct 8682 GTACTTTCTTTTTAGATATTATAGTCGGATAAAGTTCTTCCGTCTTCCAATTATTTTCCA 8623 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||| || | | | ||| | ||||| ||||||||||| | ||||| ||||| Sbjct 8622 GCGAAAATTAATCTTTATTGGTCAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTG 8563 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || ||||| || ||||| ||||| || || | || || || || || || | || Sbjct 8562 ACATTTTCAATGGAATCAGAAGATTCAACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTT 8503 Query 288457 TTGACGAATATCTGCATT 288474 |||||||| || | |||| Sbjct 8502 TTGACGAAAATTTACATT 8485 Score = 109 bits (120), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| ||| || | | ||| | ||| | ||| | ||| |||||||| ||||| || Sbjct 6831 TACAT-TCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTA 6889 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 |||| | || | ||| |||||||||| |||||| ||||| || | | | |||| Sbjct 6890 ATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATC 6949 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 | || ||||||||||| || | ||||| ||||| || ||||| ||||||||| || Sbjct 6950 AGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGA 7009 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || | || || || || || || | || |||||||| || | |||| Sbjct 7010 TTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 7064 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || |||||||||| ||||||||| || | | || | |||||||||||||| |||||| Sbjct 9138 GTACTTTCTTTTTAGATATTATAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCG 9079 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || || || | | | ||| | || |||||||||||||| | ||||| ||||| Sbjct 9078 GCAAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTTGGCTTTG 9019 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || ||||| || ||||| ||||| || || | || || || || || |||| ||| Sbjct 9018 ACATTTTCAATGGAATCAGAGGATTCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTT 8959 Query 288457 TTGACGAATATCTGCATT 288474 || ||||| || | |||| Sbjct 8958 TTAACGAAAATTTACATT 8941 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || |||||||||| ||| ||||| || | | || | ||| |||||||||| |||||| Sbjct 6411 GTACTTTCTTTTTAGATGTTATAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCA 6470 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||| || | | | |||| | || ||||||||||| || | ||||| ||||| Sbjct 6471 GCGAAAATTAATCTTTATTGATCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTA 6530 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || ||||| || ||||| ||||| || || | || || || || || || | || Sbjct 6531 ACATTTTCAATGGAATCAGAAGATTCAACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTT 6590 Query 288457 TTGACGAATATCTGCATT 288474 |||||||| || | |||| Sbjct 6591 TTGACGAAAATTTACATT 6608 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || |||||||||| ||| ||||| || | | || | |||||||||||||| |||||| Sbjct 6639 GTACTTTCTTTTTAGATGTTATAATCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCG 6698 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || || || | | | ||| | ||||| ||||||||||| | ||||| ||||| Sbjct 6699 GCAAAAATTAATCTTTATTGGTCAGGGGGGATACCTTCTTTATCTTAAATTTTAGCTTTA 6758 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || ||||| || ||||| ||||| || || | || || || || ||||| | || Sbjct 6759 ACATTTTCAATGGAATCAGAAGATTCAACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTT 6818 Query 288457 TTGACGAATATCTGCATT 288474 || ||||| || | |||| Sbjct 6819 TTAACGAAAATTTACATT 6836 Score = 96.9 bits (106), Expect = 8e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| ||| || | | ||| | ||| | ||| | ||| |||||||| ||||| || Sbjct 8946 TACAT-TCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTA 8888 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 |||| | || | ||| |||||||||| |||||| ||||| || | | | ||| Sbjct 8887 ATCGGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTC 8828 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 | || ||||||||||| || | ||||| ||||| || ||||| |||||||| || Sbjct 8827 AGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGA 8768 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || | || || || || || || | || || ||||| || | |||| Sbjct 8767 TTCAACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || |||||||||| || ||||| |||| | || | |||||||||||||| |||||| Sbjct 13831 GTACTTTCTTTTTAAATGTTATAATCGGATAAAGTTCTTCCGTCTTCTAATTTTTTTCCA 13772 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||| || | | | ||| | ||||| ||||||||||| | ||||| |||| Sbjct 13771 GCGAAAATTAATCTTTATTGGTCAGGGGGGATACCTTCTTTATCTTAAATTTTACCTTTA 13712 Query 288397 ACGTTTTCTATAGAATC 288413 |||||||| || ||||| Sbjct 13711 ACGTTTTCAATGGAATC 13695 >seq167 Length=324310 Score = 114 bits (126), Expect = 3e-20 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| || || || || | | || | |||||||||||||| |||||| ||||| Sbjct 152684 TTCTTTTTAAATGTTGTAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAA 152625 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | | ||| | |||||||||||||| || |||||||| ||||| ||||| Sbjct 152624 AATTAATCTTTATTGGTCAGGGGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTT 152565 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| ||||| || ||||| || || | ||||| || || ||||| | || || || Sbjct 152564 TTCAATAGAGTCAGAGGATTCGACGTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAAC 152505 Query 288462 GAATATCTGCATTATGTTATTCTAATATTT 288491 ||| || | |||| | ||||| | ||||| Sbjct 152504 GAAGATTTACATT-TTTTATTTTTTTATTT 152476 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| |||||||||||| | | || | |||||||||||||| |||||| ||||| Sbjct 152912 TTCTTTTTAGATATTATAGTCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAA 152853 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | | ||| | || |||||||||||||| | ||||| ||||| || || Sbjct 152852 AATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTTAGCTTTAACATT 152793 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || || || ||||| || || | || || || || ||||| | ||| || || Sbjct 152792 TTCAATGGAGTCAGAAGATTCAACATCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAAC 152733 Query 288462 GAATATCTGCAT 288473 ||| || | ||| Sbjct 152732 GAAAATTTACAT 152721 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| ||| |||||||| | | || | |||||||||||||| |||||| ||||| Sbjct 153140 TTCTTTTTAGATGTTATAGTCAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAA 153081 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | | |||| |||||||||||||| || | ||||| ||||| || || Sbjct 153080 AATTAATCTTTATTGATCGGGGGGGATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATT 153021 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| ||||| || ||||| || || | ||||| || || || || | ||| ||||| Sbjct 153020 TTCAATAGAGTCAGAAGATTCAACGTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGAC 152961 Query 288462 GAATATCTGCAT 288473 || || | ||| Sbjct 152960 AAAAATTTACAT 152949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650047075264