Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq130 143 2e-29 seq167 127 1e-24 seq249 120 2e-22 >seq130 Length=530367 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| |||||||| || || || ||||||| || ||||||||| Sbjct 6837 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 6896 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | |||||||||| ||| |||||| | || || | | ||| || ||| Sbjct 6897 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGA 6956 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||||||| ||| ||| |||| |||| |||| | ||| || Sbjct 6957 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAACA 7016 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| ||||| || || | ||||| || ||||||| ||| Sbjct 7017 TCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 7063 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| |||||||| || || || ||||||| || ||||||||| Sbjct 8940 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 8881 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | |||||||||| ||| |||||| | || || | | |||||| ||| Sbjct 8880 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGA 8821 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||||||| ||| ||| |||| |||| ||| | ||| || Sbjct 8820 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAACA 8761 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| ||||| || || | ||||| || ||||||| ||| Sbjct 8760 TCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACAT 8714 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| || || || | |||| ||||||| ||||| ||||| Sbjct 6381 CCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGAT 6440 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | |||||||||| ||| |||||| | || || | | ||| || ||| Sbjct 6441 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGA 6500 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||||||| ||| ||| |||| || | ||| | ||| ||| Sbjct 6501 ATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAACG 6560 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||||||||| || || | ||||| || ||||||| ||| Sbjct 6561 TCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 6607 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||| || | |||| ||||||| || || || ||| Sbjct 7065 CCTCCTCTTAATCTTAAGACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGGAT 7124 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| |||||||||||| ||| |||||| | || || | | |||||| || Sbjct 7125 AAAGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 7184 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||||| ||| || |||| || | |||| ||| ||| Sbjct 7185 ATACCTTCTTTATCTTAAATTTTAGCTTTAACGTTTTCAATGGAATCGGATGATTCAACG 7244 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 ||||||||||| ||||| || || | ||||| || ||||||| ||||||| Sbjct 7245 TCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACATATTT 7295 Score = 118 bits (130), Expect = 8e-22 Identities = 174/246 (71%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| || ||||| || | |||| ||||||| || || || ||| Sbjct 8712 CCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGGAT 8653 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| |||| ||| |||||| | || || | | |||||| || Sbjct 8652 AAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 8593 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||||| ||| ||| |||| || | ||| | ||| ||| Sbjct 8592 ATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCAGAAGATTCAACG 8533 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 ||||| ||||||||||| || || | ||||| || ||||||| ||| ||| || | | Sbjct 8532 TCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATTTTTAAAGT---T 8476 Query 15190 TTTTTA 15195 |||||| Sbjct 8475 TTTTTA 8470 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || |||| |||||||| || || || | |||| ||||||| || || ||||| | | Sbjct 9168 CCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATATTATAATCAGAT 9109 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| |||||||||||| ||| || || | || || | | |||||| || Sbjct 9108 AAGG-TTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGG 9050 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||| || || |||||||| ||| ||| |||| || | ||| ||| || Sbjct 9049 AATTCCTTCTTTATCTTAAATTTTGGCTTTGACATTTTCAATGGAATCAGAGGATTCAAC 8990 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| ||||| || |||| |||||| || ||||||| ||| Sbjct 8989 ATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAACGAAAATTTACAT 8942 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| || || || || | |||| ||||||| ||||| ||||| Sbjct 6609 CCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGAT 6668 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| |||||||||||| ||| || || | || || | | |||||| || Sbjct 6669 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGGG 6728 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||||| ||| ||| |||| || | ||| | ||| ||| Sbjct 6729 ATACCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAACG 6788 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||||| ||||| || || | ||||| || ||||||| ||| Sbjct 6789 TCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 6835 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| ||||| | | |||| ||||||| ||||| ||||| | | |||| | || Sbjct 10889 TAACACTAAGTATAAGGTACTTTCTTTTTAAATGTTATAATCAGATAAAGTTCTTTCATC 10830 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 |||||||| ||| ||| | | || | | | ||| || ||||||||||| || || Sbjct 10829 TTCTAATTATTTTCCATCTAAAATTATTCTTTATTGATCAGGGGGAATTCCTTCTTTATC 10770 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||||| | ||| |||||||| |||||||| | || ||||||||||||| | Sbjct 10769 TTAAATTTTACCTTTGACAATTTCAATAGTATCATGACATTAAACGTCTAAGGTAAATTT 10710 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTT 15172 ||| || | | ||||| || ||||||| Sbjct 10709 TTTTCCCATTAAGGTTTTGACGAAAATTT 10681 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/218 (71%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 14959 AATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TC 15016 |||| |||||||| | | |||| ||||||| ||||| ||||| || ||| || Sbjct 11581 AATCATAAAACTAGTTTTAAGGTACTTTCTTTTTAAATGTTATAATCA--GATAATGTTC 11524 Query 15017 TCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTT 15076 | ||||||||||| ||| || || | ||||| | | |||||| |||||||||| Sbjct 11523 TTCCGTCTTCTAATGATTTTCCGGCAAAAATCAATCTTTATTGGTCAGGGGGAATTCCTT 11464 Query 15077 CCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGG 15136 | ||||| ||||||| ||||||| |||| |||| ||| || || | || | Sbjct 11463 CTTTGTCTTAAATTTTAGCTTTTACATTTTCAATAGAATCAGATGGCTCCACATTTATAG 11404 Query 15137 TAATGG--TTTTACCTGTCAGAGTTTTTACAAAAATTT 15172 |||||| ||||| ||| || |||| |||||||||| Sbjct 11403 TAATGGTTTTTTAACTG-CA-TGTTTAAACAAAAATTT 11368 >seq167 Length=324310 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||| ||||| || | || || ||||||| ||||| || || Sbjct 153175 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGAT 153116 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| |||||||||||| ||| || ||| | || || | | ||| ||| || Sbjct 153115 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGGG 153056 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||||||| ||| ||| |||| |||| || | ||| ||| Sbjct 153055 ATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAACG 152996 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| || || | |||||| |||||||||| |||| Sbjct 152995 TCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACATA 152948 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || |||| ||||||||| |||||||| | ||| || ||||||| ||||||||||| | | Sbjct 152719 CCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGAT 152660 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || |||| |||||||||||| ||| |||||| | || || | | |||||| || Sbjct 152659 AAGG-TTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGG 152601 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||| ||||| ||||| ||| || |||| |||| || ||| || Sbjct 152600 GATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGAC 152541 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 ||| || || |||||||| || || | ||||| || || |||| ||| ||| Sbjct 152540 GTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATTTTT 152489 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||||||||||||| || | || || ||||||| || || || || Sbjct 152947 CCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGAT 152888 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| |||||||||||| ||| || ||| | || || | | |||||| ||| Sbjct 152887 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGGA 152828 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||||||| ||| ||| |||| || | || | ||| || Sbjct 152827 ATTCCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAACA 152768 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| ||||| || || | |||||| || ||||||| |||| Sbjct 152767 TCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACATA 152720 >seq249 Length=567749 Score = 120 bits (132), Expect = 2e-22 Identities = 172/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 14940 ACCATGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTT 14999 ||||| || || |||| |||||||||||||| || | ||| || ||||||| || || Sbjct 154918 ACCATTCCT-CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATT 154860 Query 15000 GTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTG 15059 |||||| | | |||| | |||||||||| ||| || ||| | || || | | ||| Sbjct 154859 GTAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTG 154800 Query 15060 GTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCT 15119 || || || ||||| || || | |||||| ||| || |||| |||| |||| Sbjct 154799 ATCAGGGGGGATACCTTCTTTATCTTAGATTTTGGCTTTGACGTTTTCGATAGAATCGGA 154740 Query 15120 ATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | ||| ||||| | ||| || ||||| || || || ||||| || ||||||| ||| || Sbjct 154739 AGCTTCGACGTCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTGACGAAAATTTACATTTT 154680 Query 15180 T 15180 | Sbjct 154679 T 154679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390745554080