Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq167 118 1e-21 seq130 113 4e-20 seq249 100 3e-16 >seq167 Length=324310 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || | || ||||| |||| ||||||||| || | ||| | Sbjct 152935 CTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGATAAAGTTCTTCCG 152876 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||| ||| | || |||| || ||||| || ||||| ||||||||| Sbjct 152875 TCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTA 152816 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||| | ||| | || ||| ||||| || || || | ||||| Sbjct 152815 TCTTAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAACATCCAAAGTAATA 152756 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| |||||| || ||||||| ||| Sbjct 152755 GTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 >seq130 Length=530367 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | ||||| |||| || | || ||| |||| ||||||||| ||| Sbjct 8715 ATTCCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCG 8656 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || ||||||| |||||| ||| | || |||| || ||||| || Sbjct 8655 GATAAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGG 8596 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||||||||||| |||||| ||||| ||| | || || ||||| || Sbjct 8595 GGGATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCAGAAGATTCA 8536 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| || |||| ||||| || ||||||| ||| Sbjct 8535 ACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 8486 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45149 TTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTA 45208 ||| |||| |||||||||||| | |||| | || || |||| |||||| || | Sbjct 9133 TTCTTTTTAGATATTATAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAA 9074 Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268 || |||| || ||||| || ||||| ||||||||||||| |||||| ||||| Sbjct 9073 AATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTTGGCTTTGACATT 9014 Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| | || || || || || || || | ||||| ||||| || || | |||||| || Sbjct 9013 TTCAATGGAATCAGAGGATTCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAAC 8954 Query 45329 AAAAATTTGCAT 45340 ||||||| ||| Sbjct 8953 GAAAATTTACAT 8942 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || || |||| || | || ||| |||| ||||||||| ||| Sbjct 7062 ATTCCTCCTCTTAATCTTAAGACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCG 7121 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || |||| |||||| ||| | || |||| || ||||| || Sbjct 7122 GATAAAGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGG 7181 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||||||||||| |||||| ||| | ||| | || ||||| || || Sbjct 7182 GGGATACCTTCTTTATCTTAAATTTTAGCTTTAACGTTTTCAATGGAATCGGATGATTCA 7241 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| ||||||| ||||| || ||||||| ||| Sbjct 7242 ACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 7291 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | ||||| || | || | || ||| |||| ||| |||||||| Sbjct 6606 ATTCCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCA 6665 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || |||| |||||| || | || |||| || ||||| || Sbjct 6666 GATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGG 6725 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||||||||||| |||||| ||| | ||| | || || ||||| || Sbjct 6726 GGGATACCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCA 6785 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| ||||||| ||||| || ||||||| ||| Sbjct 6786 ACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 6835 >seq249 Length=567749 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| | | || || |||| || | || ||||| |||| |||||| ||||| Sbjct 154910 TCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGA 154851 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | ||| || |||| |||||| ||| | || |||| || || || || || Sbjct 154850 TAAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGG 154791 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || ||||||||||||| ||||| ||||| ||| | | ||||||| ||||| Sbjct 154790 GATACCTTCTTTATCTTAGATTTTGGCTTTGACGTTTTCGATAGAATCGGAAGCTTCGAC 154731 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| ||||| || ||||| || ||||||| ||| Sbjct 154730 GTCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTGACGAAAATTTACAT 154683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001572788480