Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq129 104 2e-17 seq130 93.3 3e-14 seq167 89.7 4e-13 >seq129 Length=365655 Score = 104 bits (114), Expect = 2e-17 Identities = 197/284 (69%), Gaps = 11/284 (4%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| ||||||||||||||||||| ||| ||||| | ||| ||| | ||| || ||| Sbjct 253109 ACCAAGTGCAAAGTGCTTTCTTTTTATATTTTATATTAGGCTAAACTTCCTTCGTCTTCC 253168 Query 39571 AATTGTT-TCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG-TCGC 39628 || | || ||||| ||||||| | | | || || | || | ||||||||| || Sbjct 253169 AACTATTGTCCCG-CAAAAATAAGCCTTTATTGGTCAGGCGGAATTCCTTCTTTGCTCTG 253227 Query 39629 ATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688 | ||||||| ||| | ||| ||| |||| ||| |||| | || ||||||| Sbjct 253228 A-ATTTTTTTCTTACAAATTTCTATTGTCTCTGAAGCTTCTACGTAGAGGGTGATTGTTT 253286 Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTTCGTTGGTTTAATGATGTC 39748 | |||||||||||||||||| | || | ||| || | | | | | |||| || | Sbjct 253287 TTCCCGTTAAAGTTTTTACGTAAATTTCCATTTCCTATATAT-----ATATAATAATATA 253341 Query 39749 GCTAAAATTATATTCGATTATTTATACT--TAAATAATTAAGGT 39790 |||| || |||| || |||||| | ||| ||||| |||| Sbjct 253342 TATAAATTTTTATTTATTTTTTTATAATAGTAATTAATTTAGGT 253385 >seq130 Length=530367 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| || || || |||||||||| || |||||||| | ||| | | |||| || Sbjct 6399 ACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGATAAAGTTCTTCCATCTTCT 6458 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||| ||| || | |||||||| | | ||||| | ||| | ||||||||||| | Sbjct 6459 AATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGAATTCCTTCTTTGTCTTAA 6518 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||||| | | | | || | ||| ||||| |||||||| ||||| Sbjct 6519 ATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAACGTCTAAAGTAATGGTTTTT 6578 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||| ||||| || | ||| Sbjct 6579 CCAGTTAAGGTTTTGACGAAAATTTACAT 6607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| || || || |||||||||| ||||||||||| | || | | | || || Sbjct 9150 ACCAAGTGTAAGGTACTTTCTTTTTAGATATTATAATCAGATAAGGTTCTTCCGTCTTCT 9091 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||| ||| ||| |||||||||| | | || || | ||| | |||||||| || | Sbjct 9090 AATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAA 9031 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||| | | | | | || | | ||| || || |||||||| ||||| Sbjct 9030 ATTTTGGCTTTGACATTTTCAATGGAATCAGAGGATTCAACATCTAAAGTAATAGTTTTT 8971 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| ||||| || | ||| Sbjct 8970 CCAGTCAAAGTTTTAACGAAAATTTACAT 8942 >seq167 Length=324310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | | || || || |||||| |||||||| |||||||| || | Sbjct 152947 CCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGAT 152888 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | | || || |||| ||| ||| | |||||||| | | || || | ||| Sbjct 152887 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGGA 152828 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || | ||||| ||||| | | | | ||| | ||| || Sbjct 152827 ATTCCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAACA 152768 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 152767 TCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || || || |||||| |||||||| || ||||| || | ||| | | | || || Sbjct 153157 ACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGATAAAGTTCTTCCGTCTTCT 153098 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||| ||| ||| | |||||||| | | ||||| | ||| | ||||||||||| | Sbjct 153097 AATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGGGATTCCTTCTTTGTCTTAA 153038 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| ||||| | | | | ||| | ||| ||||||||||| || ||||| Sbjct 153037 ATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAACGTCCAAAGTGATGGTTTTT 152978 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| || || || | ||| Sbjct 152977 CCAGTTAAAGTTTTGACAAAAATTTACAT 152949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347368380732704