Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq130 145 2e-29 seq249 125 2e-23 seq167 116 8e-21 seq129 107 4e-18 >seq130 Length=530367 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | || |||||||| ||||||| |||||||||||||| | ||| Sbjct 8935 TCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGATAAAGT 8876 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | || || ||||| || | || || |||||| || ||||| || Sbjct 8875 TCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGAATTCC 8816 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| |||||| ||||| || ||||| | || ||| ||| || || | Sbjct 8815 TTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAACATCTAA 8756 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || ||||| || || ||||| ||||| | || |||| Sbjct 8755 AGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | || |||||||| ||||||| |||||||||||||| | ||| Sbjct 6842 TCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGATAAAGT 6901 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | || || ||||| || | || || ||| || || ||||| || Sbjct 6902 TCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGAATTCC 6961 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| |||||| ||||| || ||||| | || ||| ||| || || | Sbjct 6962 TTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAACATCTAA 7021 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || ||||| || || ||||| ||||| | || |||| Sbjct 7022 AGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 7064 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||||| || || ||||| | | |||||| |||||||| | | || || ||||| Sbjct 6417 TCTTTTTAGATGTTATAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAA 6476 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | || || ||| || || ||||| ||||||||||||| |||||| || || || Sbjct 6477 ATTAATCTTTATTGATCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTT 6536 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 ||||||| || ||| ||| || || | |||| || ||||| || || ||||| ||| Sbjct 6537 TCAATGGAATCAGAAGATTCAACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACG 6596 Query 195130 AACACTTGCATT 195141 || | || |||| Sbjct 6597 AAAATTTACATT 6608 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||||| ||||| ||||| | | ||||| || ||||| | | || || || || Sbjct 9132 TCTTTTTAGATATTATAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAA 9073 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | || || |||||| || ||||| |||||||| |||| |||||| ||||| || Sbjct 9072 ATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTTGGCTTTGACATTT 9013 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 ||||||| || || ||| || || | |||| || ||||| ||||||||||| ||| Sbjct 9012 TCAATGGAATCAGAGGATTCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAACG 8953 Query 195130 AACACTTGCATT 195141 || | || |||| Sbjct 8952 AAAATTTACATT 8941 >seq249 Length=567749 Score = 125 bits (138), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | ||| | ||||| ||||||| ||||||||||| | | ||| Sbjct 154904 TCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGATAAAGT 154845 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | || || |||||||| | || || ||| || || || || || Sbjct 154844 TCTTCCATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGGGATACC 154785 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||| ||||| |||||||| || || | || ||| ||| || ||||| Sbjct 154784 TTCTTTATCTTAGATTTTGGCTTTGACGTTTTCGATAGAATCGGAAGCTTCGACGTCAAG 154725 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| | || || || || | ||||| ||||| | || ||||| Sbjct 154724 GGTGATAGTTTTCCCGGTAAGGGTTTTGACGAAAATTTACATTT 154681 >seq167 Length=324310 Score = 116 bits (128), Expect = 8e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||||| ||| |||||||| | | ||||| || ||||| | | || || Sbjct 152689 GTGGATTCTTTTTAAATGTTGTAATCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCA 152630 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || || |||||| || || || |||||||||||||| ||||| ||| Sbjct 152629 GCGAAAATTAATCTTTATTGGTCAGGGGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTG 152570 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||| | ||| || ||| || || | || | || ||||| || || ||| Sbjct 152569 ACGTTTTCAATAGAGTCAGAGGATTCGACGTCCAAAGTGATGGTTTTTCCGGTTAAGGTT 152510 Query 195124 TTTACGAACACTTGCATTT 195142 || ||||| | || ||||| Sbjct 152509 TTAACGAAGATTTACATTT 152491 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||| | |||||| ||||||| || || || || | | ||| Sbjct 153170 TCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGATAAAGT 153111 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | || || ||||| || | || || ||| || || || || || Sbjct 153110 TCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGGGATTCC 153051 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| |||||| || || || ||||| | ||| ||| ||| || || | Sbjct 153050 TTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAACGTCCAA 152991 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || |||||||| || || | || ||| Sbjct 152990 AGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 >seq129 Length=365655 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||||||| | ||| | |||| ||||||| || || || | ||| | | | Sbjct 253096 TCTAAGTCTCAAAACCAAGTGCAAAGTGCTTTCTTTTTATATTTTATATTAGGCTAAACT 253155 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || | ||||| | || | || || || ||||| | || |||||| || ||||| || Sbjct 253156 TCCTTCGTCTTCCAACTATTGTCCCGCAAAAATAAGCCTTTATTGGTCAGGCGGAATTCC 253215 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||| |||||||||| ||| | || || || || ||| ||| || | || Sbjct 253216 TTCTTTGCTCTGAATTTTTTTCTTACAAATTTCTATTGTCTCTGAAGCTTCTACGTAGAG 253275 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| | || ||||| || |||||||||||| | | || ||||| Sbjct 253276 GGTGATTGTTTTTCCCGTTAAAGTTTTTACGTAAATTTCCATTT 253319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477506012896