Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq141 147 2e-30 seq232 105 8e-18 >seq141 Length=555024 Score = 147 bits (162), Expect = 2e-30 Identities = 206/286 (72%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 ||||| |||||||| ||| ||| | | || |||||| ||||||| || | | Sbjct 69090 CCTTCAATACTATCTTCTTACATTTAAACTAAGAAACAAGAGGACATTTAAGGTTTAGGT 69149 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGATAACAATT 48657 ||||| || ||||||||||| |||| ||||||| |||||||||| | || || ||| | Sbjct 69150 GTTCCAGAGTTAAATAATGTAGGAGTTGCATGAGTAAACCATTTTTGACTCAT--CAACT 69207 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| || ||| |||| ||| || || || |||| ||| || | ||||| Sbjct 69208 CGTAAGTTTTAAACACATTTTCTAAATCATTTTTGTGAATTCCTAAAGAAACTCTCATTA 69267 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||||| |||||| || |||||||| | | ||| | | | ||| |||||||||| Sbjct 69268 TCATATATTAAGGTCTCTCGACAATTTTTTGGTGAATTCTTAGCAAATAAGATTTTTCCA 69327 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAAT 48823 | |||||||| |||||| ||| || | | | || ||| |||||| Sbjct 69328 AAGTTTTAAACCCAAAAAAGTCATAGGTATAATC-TTAAGATTAAT 69372 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 47331 AATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCA 47390 ||||||||||||| |||||| | |||||| ||||||||| ||||||| | ||||||| Sbjct 67549 AATTCTCCAGATAATACTCTTCTAGTATATAAATTACTTGTTAATGGTTCAAAAGATTCA 67608 Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTT 47450 ||||||| | ||||||| || || || ||||| | |||||||| || |||| Sbjct 67609 GTATTTCCCATAATTTGACTTGTACTAGCAGTGGGCATAGGTGCAACTAGCAAAGAATTT 67668 Query 47451 CTTACTCCAT--Attttt 47466 || | |||| |||||| Sbjct 67669 CTCAAACCATTAATTTTT 67686 >seq232 Length=78669 Score = 105 bits (116), Expect = 8e-18 Identities = 108/136 (79%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 18683 CAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCA 18741 ||||||||||||||||||||||||||||||| | ||| || ||| ||||| |||| Sbjct 21561 CAACTCTTTTTTCAAAGAAATTAGTTTTTCCTTATAA-ACTAATCATATCCATCCAATCG 21619 Query 18742 AATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGTAGTCTATCCGC 18800 || ||||||||||||||||| || ||| || ||| || | || | || |||||| || Sbjct 21620 AAAGGATTTTTTACATTATA-ATATTTAGGAGCTCCCAAAACAAACAATAATCTATCAGC 21678 Query 18801 TACAAATTTAATATAT 18816 ||||||| ||||||| Sbjct 21679 GACAAATTCAATATAT 21694 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 19036 CttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCT 19095 ||||||||||||||||| || | ||| ||| |||||||| |||||||| || ||| Sbjct 22142 CTTTTTTTTAACCAGAAAATGGCGCAAAAACTTCCTGAAAAGAAAATACCTTCGACGGCT 22201 Query 19096 GCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT-ATTATGAATCCATTTCAGTGC 19154 |||||||||| | |||| || || || ||| ||||| ||||||||||| || Sbjct 22202 GCAAAAGCAATCAATCTTAAAGCAAAA----GATTATTAATTATTAATCCATTTCAAGGC 22257 Query 19155 CCAATCAGCCTTCTTTTTTA 19174 ||| ||||| || || |||| Sbjct 22258 CCATTCAGCTTTTTTATTTA 22277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106776408320