Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq130 152 4e-32 seq249 149 5e-31 seq167 143 2e-29 seq129 111 1e-19 >seq130 Length=530367 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | ||| |||||||| || || |||||||||| ||||||||||||| Sbjct 6835 TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGG 6894 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| || |||| || || || || || || | | |||||| || | Sbjct 6895 ATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGG 6954 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||| |||| |||||| ||| ||| |||| | || || || | ||| | Sbjct 6955 GAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAA 7014 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||| | ||||| || ||||| ||||| || || || | ||| Sbjct 7015 CATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 7063 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | ||| |||||||| || || |||||||||| ||||||||||||| Sbjct 8942 TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGG 8883 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| || |||| || || || || || || | | ||| || || | Sbjct 8882 ATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 8823 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||| |||| |||||| ||| ||| |||| | || ||||| | ||| | Sbjct 8822 GAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAA 8763 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||| | ||||| || ||||| ||||| || || || | ||| Sbjct 8762 CATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACAT 8714 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | || ||||| || | |||| |||||||| ||||| || |||| Sbjct 8714 TTCCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGG 8655 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| | || ||||||| || || || || || || | | ||| || || | Sbjct 8654 ATAAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 8595 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||||||||||| |||||| ||| ||| |||| | | ||||| | ||| | Sbjct 8594 GGATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCAGAAGATTCAA 8535 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||| | ||||| || ||||| ||||| || || || | ||| Sbjct 8534 CGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 8486 Score = 123 bits (136), Expect = 2e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 101238 CATT-TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAA 101296 |||| |||||||||||| | ||| || || || | |||| |||||||| || || ||| Sbjct 6375 CATTATCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAA 6434 Query 101297 TCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 || | | |||||| |||| || |||| || || || || || || | | |||||| Sbjct 6435 TCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCA 6494 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTT 101416 || ||||| |||||||| |||| |||||| ||| ||| |||| | | ||||| | | Sbjct 6495 GGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGAT 6554 Query 101417 TCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||| | ||||| || ||||| ||||| || || || | ||| Sbjct 6555 TCAACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 6607 Score = 123 bits (136), Expect = 2e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 101238 CATT-TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAA 101296 |||| |||||||||||| | ||| || || || | |||| |||||||| ||||| ||| Sbjct 9174 CATTATCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATATTATAA 9115 Query 101297 TCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 || | | ||||| | || || |||| || || ||||| || || | | ||| || Sbjct 9114 TCAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCA 9055 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTT 101416 || ||||| ||||||||||||| |||||| ||| ||| |||| | | ||||| | | Sbjct 9054 GGGGGAATTCCTTCTTTATCTTAAATTTTGGCTTTGACATTTTCAATGGAATCAGAGGAT 8995 Query 101417 TCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||| | ||||| || || |||||||| || || || | ||| Sbjct 8994 TCAACATCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAACGAAAATTTACAT 8942 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | || || || || | |||| |||||||| || || ||||| | Sbjct 6607 TTCCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAG 6666 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| | || || |||| || || ||||| || || | | ||| || || | Sbjct 6667 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGG 6726 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||||||||||| |||||| ||| ||| |||| | | ||||| | ||| | Sbjct 6727 GGATACCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAA 6786 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| |||||||| ||||| || || || | ||| Sbjct 6787 CGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 6835 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | ||| ||||| || | |||| |||||||| ||||| || |||| Sbjct 7063 TTCCTCCTCTTAATCTTAAGACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGG 7122 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| | || || |||| || || || || || || | | ||| || || | Sbjct 7123 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 7182 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||||||||||| |||||| ||| || |||| | | || || | ||| | Sbjct 7183 GGATACCTTCTTTATCTTAAATTTTAGCTTTAACGTTTTCAATGGAATCGGATGATTCAA 7242 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| |||||||| ||||| || || || | ||| Sbjct 7243 CGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 7291 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 101237 ACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAA 101296 ||||| ||||||||||||| ||| | || || | |||| |||||||| || || ||| Sbjct 13867 ACATTACCTCCTCTTAAACTTAATAACAAGTGTAAGGTACTTTCTTTTTAAATGTTATAA 13808 Query 101297 TCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 |||| | |||||| | || || |||| || || || || || || | | ||| || Sbjct 13807 TCGGATAAAGTTCTTCCGTCTTCTAATTTTTTTCCAGCGAAAATTAATCTTTATTGGTCA 13748 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || || ||||||||||||| |||||| Sbjct 13747 GGGGGGATACCTTCTTTATCTTAAATTTT 13719 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||| || |||| ||| ||||| | | |||| |||||||| || || ||||| | Sbjct 10903 CCTTCTTTTAATAATAACACTAAGTATAAGGTACTTTCTTTTTAAATGTTATAATCAGAT 10844 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || |||| || || | || || | | | |||||| || ||| Sbjct 10843 AAAGTTCTTTCATCTTCTAATTATTTTCCATCTAAAATTATTCTTTATTGATCAGGGGGA 10784 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCA 101410 || ||||||||||||| |||||| ||| |||||||| | ||| ||| Sbjct 10783 ATTCCTTCTTTATCTTAAATTTTACCTTTGACAATTTCAATAGTATCA 10736 >seq249 Length=567749 Score = 149 bits (164), Expect = 5e-31 Identities = 186/254 (73%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 101218 TTTTTATTTAATATACTAGACATT--TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTA 101275 ||||| |||||| ||| |||| |||||||||||| | ||||||||| || | ||| Sbjct 154932 TTTTTTTTTAATTTAC----CATTCCTCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTG 154877 Query 101276 GATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCA 101335 |||||||||| ||||||||||| | | |||||| |||| || |||| || || || Sbjct 154876 GATTCTTTTTAGATATTGTAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCGGCG 154817 Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395 || || || | | |||||| || || || ||||||||||||| ||||| ||| || Sbjct 154816 AAGATTAATCTTTATTGATCAGGGGGGATACCTTCTTTATCTTAGATTTTGGCTTTGACG 154757 Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455 |||| | || || || | ||| || ||||| |||| ||||| ||||| | ||||| Sbjct 154756 TTTTCGATAGAATCGGAAGCTTCGACGTCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTG 154697 Query 101456 ACAAATATCTGCAT 101469 || || || | ||| Sbjct 154696 ACGAAAATTTACAT 154683 >seq167 Length=324310 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | ||| ||||| || | || |||||||||| || || || || | Sbjct 153177 TTCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAG 153118 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| | || || |||| || || || || || || | | ||||||||| | Sbjct 153117 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGG 153058 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||| |||| |||||| ||| ||| |||| | || |||||| | ||| | Sbjct 153057 GGATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAA 152998 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 152997 CGTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | ||||||||| || | || |||||||||| ||||| || || | Sbjct 152947 CCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGAT 152888 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || |||| || || || || || || | | ||| || || ||| Sbjct 152887 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGGA 152828 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||||| |||||| ||| ||| |||| | | |||||| | ||| || Sbjct 152827 ATTCCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAACA 152768 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | ||||| |||||||||||||| || || || | ||| Sbjct 152767 TCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 >seq129 Length=365655 Score = 111 bits (122), Expect = 1e-19 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||||||||||| | ||||||||||| | |||| |||||||| ||||| |||| | Sbjct 254634 TCCTCCTCTTAGCCTCAAAACTAAATGCAAGGTACTTTCTTTTTAAATATTACAATCAGA 254693 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | |||||| |||| || |||||||| |||||||| || | | | || |||||| || Sbjct 254694 TAAAGTTCTTTCATCTTCTAATTGCTTTCCTGCAAAAATTAGCCTTTATTAATCGGGAGG 254753 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTG--TTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 | || |||| | || ||| ||||| ||||| | |||| | ||||| || ||| Sbjct 254754 TGTTCCATCTTCA--TTAAATATTTTGGCTTTTAAATTTTCAATTGTGTCCGAAAATTCG 254811 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 | | ||| || | |||| || ||||| ||||||||| Sbjct 254812 GCCTTAAGTGTTATTTTTTTTCCAGTTAAGGTTTTTACA 254850 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 101278 TTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAA 101337 |||||||| ||| || || | ||| | | ||| | || ||||| | | || ||||| Sbjct 253126 TTCTTTTTATATTTTATATTAGGCTAAACTTCCTTCGTCTTCCAACTATTGTCCCGCAAA 253185 Query 101338 TATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAA- 101396 || | | | ||| || |||||||| |||||||| |||||||||| | |||||| Sbjct 253186 AATAAGCCTTTATTGGTCAGGCGGAATTCCTTCTTTGCTCTGAATTTTTT-TCTTACAAA 253244 Query 101397 TTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTA 101456 |||||| || || || | ||| || | || |||| ||||| || ||||||||||||| Sbjct 253245 TTTCTATTGTCTCTGAAGCTTCTACGTAGAGGGTGATTGTTTTTCCCGTTAAAGTTTTTA 253304 Query 101457 C 101457 | Sbjct 253305 C 253305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277009062816