Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015
-11-24] 288 sequences; 55,455,357 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq130 86.0 5e-12
seq129 84.2 2e-11
>seq130
Length=530367
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614
|| ||||| |||| || || ||||||| ||||| |||||||||| ||| ||||
Sbjct 9153 AAGACCAAGTGTAAGGTACTTTCTTTTTAGATATTATAATCAGATAAGGTTCTTCCGTCT 9094
Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674
|| || | || |||||||| || | || | ||| || | ||||| || || || ||
Sbjct 9093 TCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCT 9034
Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734
||| || ||| ||| | | || || || | || || || | ||||| |||
Sbjct 9033 TAAATTTTGGCTTTGACATTTTCAATGGAATCAGAGGATTCAACATCTAAAGTAATAGTT 8974
Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| ||||||||||| || ||||| | |||
Sbjct 8973 TTTCCAGTCAAAGTTTTAACGAAAATTTACAT 8942
>seq129
Length=365655
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || || || | ||| ||||| || | ||||| ||||||| || || || | |
Sbjct 253089 CGCCCCCTCTAAGTCTCAAAACCAAGTGCAAAGTGCTTTCTTTTTATATTTTATATTAGG 253148
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| ||||| ||||| ||||||| | || ||||| || || | | ||| || | |
Sbjct 253149 CTAAACTTCCTTCGTCTTCCAACTATTGTCCCGCAAAAATAAGCCTTTATTGGTCAGGCG 253208
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC-ACAGACTCTGACGCCTCC 48716
||| || || ||| | || | |||| | ||||| | | | | |||||| || ||
Sbjct 253209 GAATTCCTTCTTTG-CTCTGAATTTTTTTCTTACAAATTTCTATTGTCTCTGAAGCTTCT 253267
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | | || || ||||||||||| ||||||||||| |||| | |||
Sbjct 253268 ACGTAGAGGGTGATTGTTTTTCCCGTTAAAGTTTTTACGTAAATTTCCAT 253317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380936262909024
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |