Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq130 111 1e-19 >seq130 Length=530367 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||| || || ||||| ||||| || ||||| ||||| || ||| |||| Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || |||| ||||| |||||||| ||| | ||| ||||| Sbjct 7004 CGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6945 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||| | || || || || ||| |||| |||||| | |||| | ||||||| || Sbjct 6944 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 6885 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||||| ||||| || | |||||||||||| ||||||| || Sbjct 6884 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAAT 6834 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||| || || ||||| ||||| || ||||| ||||| || ||| |||| Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || |||| ||||| |||||||| ||| | ||| || || Sbjct 8773 TGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCA 8832 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||| | || || || || ||| |||| |||||| | |||| | ||||||| || Sbjct 8833 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 8892 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||||| ||||| || | |||||||||||| ||||||| || Sbjct 8893 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAAT 8943 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||| || || ||||| ||||| || ||||||||||| || ||| |||| Sbjct 6608 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTC 6549 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || | || ||||| |||||||| ||| | ||| ||||| Sbjct 6548 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6489 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||| | || || || || ||| |||| |||||| | |||| | | |||||||| Sbjct 6488 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAA 6429 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAAT 28789 ||| |||||||| ||| | ||| |||| ||||||||| ||||| ||||||| || Sbjct 6428 CATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGA-GGATAATGAT 6373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 |||||||| |||| || || ||||| ||||| || ||||||||||| || ||| Sbjct 8481 TAAAAATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAAT 8540 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 |||| || | | | || |||| ||||| || ||||| || | ||| | Sbjct 8541 CTTCTGATTCCATTGAAAATGTCAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTG 8600 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 | ||| | ||| | || || || || ||| |||||||||| | |||| | |||| | Sbjct 8601 ACCAATAAAGATTAATTTTCGCTGGAAAATAATTGGAAGACGGAAGAACTTTATCCGACT 8660 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||| || |||||||| ||| | ||| | ||||| |||||| ||||||| || Sbjct 8661 ATAATATCTAAAAAGAAAGTACCTTACACTTAGTATTGAGATTAAGAGGAGGAAT 8715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||| || || ||||| ||||| || ||||| |||||| || ||| |||| Sbjct 6836 AATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTC 6777 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || | || ||||| || ||||| || | ||| || || Sbjct 6776 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCA 6717 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||| | || ||||| || ||| |||| ||||| | |||| | | |||||||| Sbjct 6716 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTATAA 6657 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||| ||| | ||| ||||||| |||||| ||||||| || Sbjct 6656 CATCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGGAAT 6606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425403306829152