Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq130 176 7e-39 seq167 147 3e-30 seq249 140 5e-28 seq129 89.7 8e-13 >seq130 Length=530367 Score = 176 bits (194), Expect = 7e-39 Identities = 183/239 (77%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||| |||| || ||||||| || ||||||||||||||||| ||||| || ||| ||| Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||| || ||| |||||| |||| |||||||| || || || || || Sbjct 8773 TGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCA 8832 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 | ||||||| |||| || || || | | |||||| ||||||||||| ||||| || Sbjct 8833 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 8892 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAAATT 156058 ||| | ||||| | || || |||||||| |||||||||||||| || |||||| || Sbjct 8893 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAATGTAAATTT 8951 Score = 167 bits (184), Expect = 3e-36 Identities = 181/239 (76%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||| |||| || | ||||| || ||||||||||||||||| ||||| || ||| ||| Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| |||| ||| || ||| |||||| |||| |||||||| || || || || || Sbjct 7004 CGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6945 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 | ||||||| |||| || || || | | |||||| ||||||||||| ||||| || Sbjct 6944 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 6885 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAAATT 156058 ||| | ||||| | || || |||||||| |||||||||||||| || |||||| || Sbjct 6884 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAATGTAAATTT 6826 Score = 154 bits (170), Expect = 2e-32 Identities = 178/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||| |||| || ||||||| || || |||||||||||||| ||||| || ||| ||| Sbjct 6836 AATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTC 6777 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || ||| |||||| ||||||||||||| || || || || || Sbjct 6776 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCA 6717 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 | ||||||| |||| |||||| || | | ||||| ||||||||||| |||||||| Sbjct 6716 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTATAA 6657 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAAATT 156058 || | ||||| || | || || || || ||||||||||| || |||||| || Sbjct 6656 CATCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGGAATGTAAATTT 6598 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||| |||| || ||||||| |||||||||||||||||||| ||||| || ||| || Sbjct 8941 AATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTC 9000 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || ||| ||||| ||||||||||||| || || || || || Sbjct 9001 TGATTCCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCA 9060 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 | ||||||| |||| |||||| || | | ||||| ||||| ||||| |||||||| Sbjct 9061 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAA 9120 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| | ||||| || | || || || |||||||||||||| || Sbjct 9121 TATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGG 9168 Score = 149 bits (164), Expect = 9e-31 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || ||| |||| || ||||||| || || |||||||||||||| ||||| || ||| Sbjct 7297 AAAAATATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAA 7238 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 || ||| ||| |||||| ||| |||||| ||||||||||||| || || || Sbjct 7237 TCATCCGATTCCATTGAAAACGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCT 7178 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||| ||||||| |||| || || || | | ||||| ||||||||||| || Sbjct 7177 GACCAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACTTTATCCGAC 7118 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAA 156054 |||||||| | ||||| || | || ||||| |||||||||||||| || ||||| Sbjct 7117 TATAATATCTAAAAAGAAAGTACCTTACACTTAGTCTTAAGATTAAGAGGAGGAATGTAA 7058 Query 156055 AATT 156058 | || Sbjct 7057 ATTT 7054 Score = 149 bits (164), Expect = 9e-31 Identities = 190/261 (73%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 155800 ATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTA 155859 |||| |||| |||| |||||| |||| || | ||||| || ||||||||||| | Sbjct 8469 ATAAAAAAACTTTA------AAAATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCA 8522 Query 155860 TTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATA 155919 |||| ||||| || ||| ||||||| ||| ||| || ||| |||||| |||||| Sbjct 8523 TTACTTTAGACGTTGAATCTTCTGATTCCATTGAAAATGTCAAAGCTAAAATTTAAGATA 8582 Query 155920 AAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATA 155979 ||||||| || || || || ||| ||||||| |||| || || || | | ||||| Sbjct 8583 AAGAAGGTATCCCCCCTGACCAATAAAGATTAATTTTCGCTGGAAAATAATTGGAAGACG 8642 Query 155980 CCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGAT 156039 ||||||||||| || |||||||| | ||||| || | || ||||| || |||| Sbjct 8643 GAAGAACTTTATCCGACTATAATATCTAAAAAGAAAGTACCTTACACTTAGTATTGAGAT 8702 Query 156040 TAAGAGGCGG--TGTAAAATT 156058 ||||||| || |||||| || Sbjct 8703 TAAGAGGAGGAATGTAAATTT 8723 Score = 145 bits (160), Expect = 1e-29 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||| |||| || | ||||| || ||||||||||| ||||| ||||| || ||| ||| Sbjct 6608 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTC 6549 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || ||| |||||| |||| |||||||| || || || || || Sbjct 6548 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6489 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 | ||||||| |||| || || || | | |||||| ||||||||||| |||||||| Sbjct 6488 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAA 6429 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATTGAA 156061 || | ||||| || | || || || |||||||||||||| || | |||||| Sbjct 6428 CATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGGATAATGATTGAA 6369 Query 156062 TAA 156064 ||| Sbjct 6368 TAA 6366 Score = 102 bits (112), Expect = 1e-16 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 155828 AATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAA 155887 ||| || ||||||| || || |||||||||||| ||| || | || ||| || | Sbjct 13640 AATTTTCGTTAAAACCTTAACCGGAAAAACTATTTATTTA-AACTTTAA--TTCATATGA 13696 Query 155888 T---ATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACA 155944 | ||| |||||| ||| |||||| ||||||||||||| || || || || ||| | Sbjct 13697 TTCCATTGAAAACGTTAAAGGTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAATA 13756 Query 155945 AAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 |||||| |||| || || || | | ||||| ||||||||||| |||||||| || Sbjct 13757 AAGATTAATTTTCGCTGGAAAAAAATTAGAAGACGGAAGAACTTTATCCGATTATAACAT 13816 Query 156005 ATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||| || | || || | ||||| |||||||| ||| Sbjct 13817 TTAAAAAGAAAGTACCTTACACTTGTTATTAAGTTTAAGAGGAGGT 13862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 155827 AAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATA 155886 |||| ||| || |||||| | | |||||| ||||| || | || || |||||| Sbjct 11368 AAATTTTTGTTTAAACATGCAGTTAAAAAACCATTACTATAAATGTGGAGCCATCTGATT 11427 Query 155887 ATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAA 155946 |||| ||| || ||| |||||| |||| |||||||| || || || || ||| ||| Sbjct 11428 CTATTGAAAATGTAAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAATAAA 11487 Query 155947 GATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATAT 156006 ||||||||| |||||| || | ||||| ||||| ||||| |||||||| || | Sbjct 11488 GATTGATTTTTGCCGGAAAATCATTAGAAGACGGAAGAACATTATCTGATTATAACATTT 11547 Query 156007 CCAAAGA 156013 ||||| Sbjct 11548 AAAAAGA 11554 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 155827 AAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATA 155886 |||| || | ||||| || | ||||||| |||| ||||| || || | ||||| Sbjct 10681 AAATTTTCGTCAAAACCTTAATGGGAAAAAAATTTACCTTAGACGTTTAATGTCATGATA 10740 Query 155887 ATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAA 155946 |||| || || ||| |||||| ||||||||||||| || || || || ||| ||| Sbjct 10741 CTATTGAAATTGTCAAAGGTAAAATTTAAGATAAAGAAGGAATTCCCCCTGATCAATAAA 10800 Query 155947 GATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATAT 156006 || | |||| | || || | | |||||| ||||||||||| |||||||| || | Sbjct 10801 GAATAATTTTAGATGGAAAATAATTAGAAGATGAAAGAACTTTATCTGATTATAACATTT 10860 Query 156007 CCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAG 156045 ||||| || | | ||||||||| ||||| || Sbjct 10861 AAAAAGAAAGTACCTTATACTTAGTGTTATTATTAAAAG 10899 >seq167 Length=324310 Score = 147 bits (162), Expect = 3e-30 Identities = 176/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||| || ||||||| || || |||||||||||||| || || || ||| |||| Sbjct 152721 ATGTAAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCT 152780 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| ||| || ||| |||||| ||||||||||||| || || || || ||| Sbjct 152781 GACTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAA 152840 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||| |||| ||||| || | | ||||| ||||||||||| || |||||| Sbjct 152841 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAT 152900 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAAATT 156058 || | ||||| | || | || ||||| |||||||| ||||| || |||||| || Sbjct 152901 ATCTAAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGAGGAGGTATGTAAATTT 152958 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||| ||| | ||||| || ||||||||||| || || || || || ||| |||| Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || |||| ||| || ||| |||||| |||| |||||||| || || || || ||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAA 153068 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||| |||| ||||| || | | ||||| ||||||||||| || ||||| Sbjct 153069 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAC 153128 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || | ||||| | || | || ||||| |||||||||||||| || Sbjct 153129 ATCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 153175 >seq249 Length=567749 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||| |||| || | ||||| | || || |||||||| || | || ||||||| | Sbjct 154680 AAAATGTAAATTTTCGTCAAAACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAGCT 154739 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || ||| ||| |||||| ||| ||||| ||||||||||||| || || || || Sbjct 154740 TCCGATTCTATCGAAAACGTCAAAGCCAAAATCTAAGATAAAGAAGGTATCCCCCCTGAT 154799 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||| ||||||| || | ||||| || | | |||||| ||||||||||| ||||| Sbjct 154800 CAATAAAGATTAATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTAC 154859 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||| | ||||| | || | || ||||| |||||||||||||| || Sbjct 154860 AATATCTAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 154909 >seq129 Length=365655 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 ||||| || |||||||||| || ||| | | | |||| ||| || | ||| ||| Sbjct 254846 AAAACCTTAACTGGAAAAAAAATAACACTTAAGGCCGAATTTTCGGACACAATTGAAAAT 254787 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 | ||| |||||| || |||| || | |||||| || || |||| | |||| | Sbjct 254786 TTAAAAGCCAAAATATTTAATGAAGATGGAACACCTCCCGATTAATAAAGGCTAATTTTT 254727 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCG 156017 || || ||||| | |||||| ||||||||||| |||| |||||| | ||||| Sbjct 254726 GCAGGAAAGCAATTAGAAGATGAAAGAACTTTATCTGATTGTAATATTTAAAAAGAAAGT 254667 Query 156018 ACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || | |||||||| || || ||||||| || Sbjct 254666 ACCTTGCATTTAGTTTTGAGGCTAAGAGGAGG 254635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869365260800