Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq172 89.7 2e-12 seq85 87.8 5e-12 >seq172 Length=296005 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 60141 GTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200 ||||| |||||| || | || || ||||| || ||||| | | | ||||||| Sbjct 282941 GTGTGTGAATATATCTGGCCGAGGCGGCGTCTTTTCCACCTTAACTTCTACTACCAAATT 282882 Query 60201 GTCCGTTTGGC-TGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 |||| ||| | |||| |||||| || |||||||| || ||||||| || | ||| Sbjct 282881 GTCCAACAGGCATTAAATA-ATTAATATTATTAGAGCCGACAAAATTTTAGGCCATTCCA 282823 Query 60260 ACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 | ||||| |||||||| ||| || || ||||| |||| ||||| | || || Sbjct 282822 ATAATAGTTTAGGCTAAACTGGTTTCTCCATGGTGATAAGCAGAGTGTTCAGCGACGTAA 282763 Query 60320 CCACTGAATTGTGCGACTTTAATTTC 60345 ||||| |||| || ||||||||||| Sbjct 282762 CCACTTAATTAAGCTACTTTAATTTC 282737 >seq85 Length=240375 Score = 87.8 bits (96), Expect = 5e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 60170 TCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTG 60229 || || || |||||| | ||| |||||||| || || || || | ||||||||| Sbjct 33445 TCTTTTCCTCCCATATTTCTGGTACCAAATTGCCCATTAGGTAATAAAAAATTAATGTTA 33504 Query 60230 TTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCG 60289 || ||||| | ||||||| ||| | ||||| ||| | | ||| |||||||| Sbjct 33505 TTTGAGCCCATAAAATTTTAAGCCATACCAATAATTGTGGATTACAAAGACACTTCACCG 33564 Query 60290 TGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||||||| | || | ||| ||||| |||||| |||| ||| ||||| ||||| Sbjct 33565 TGATGATAAGCTGATTATTCAGAAACGTATCCAGATAATTATGCAACTTTTATTTC 33620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812168993056