Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq88 87.8 2e-12 >seq88 Length=166103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 250/375 (67%), Gaps = 12/375 (3%) Strand=Plus/Minus Query 172465 TTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAG 172524 || |||| || ||||| | | |||||||||||| | || |||| || || ||| Sbjct 90404 TTGGGAAGGA-AATGGAAGTAGAGAATTTTTAGATAACTTAGGTTTTAAAGACAGGGAAG 90346 Query 172525 AAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCG 172584 || ||||||||| ||||||||||||||| ||||||||||| || || |||| | | Sbjct 90345 AAAATGATTTAGGGCCAATTTATGGATTTTAATGGAGACATTTCGGCGCCGAATACAAAG 90286 Query 172585 ACTGTG-ATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACT--ATTAATA 172641 | | || | || ||||| |||| |||| || ||| || ||| ||| | |||||| Sbjct 90285 A-TATGCACACCAATTACGAAGGATAAGGTGTCGACTAAATAA--AAAATTTAATTAATT 90229 Query 172642 CTTTACAAAACAACCCAGAAAGTAGAAG-GATGTTAATTGATAGTTGGAATGTACCTCAA 172700 || |||| || ||||| ||||| || || || | ||||| || | Sbjct 90228 AATTGAAAAATAATCCAGATTCCAGAAGACATATTTTCTG-TGCATGGAACCCCTCTGAC 90170 Query 172701 CTTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCAGaaaaaaa 172760 | |||||||| | | |||||||| ||| ||| ||| | || ||||| || | Sbjct 90169 ATCCCTAAAATGGCTTTACCTCCTTGTCATGTTTTGGCATAGTTCTATGT---TAATGAT 90113 Query 172761 TCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTAT 172820 || ||| |||| ||||| ||||||| |||| | ||| | || || || | | Sbjct 90112 GGAAAATTATCATGTCTTTTATACTAAAGATCTTGTGATATGGGACTTGGAGTTCCCTTT 90053 Query 172821 AATATTGGATTTTAT 172835 ||||||| | |||| Sbjct 90052 AATATTGCTTCTTAT 90038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632487323037440