Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq167 113 4e-20 seq130 95.1 1e-14 seq141 86.0 6e-12 >seq167 Length=324310 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | ||||| ||||||| ||||||| ||||| || || | || || ||| || | Sbjct 152493 ATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCCTCT 152552 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||| || |||||||||||||||||||| || || || ||| Sbjct 152553 GACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGACCAA 152612 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || || || || ||| | | || || |||| | | || ||||| ||| Sbjct 152613 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTACAAC 152672 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||| ||||| || |||| || || || ||||| | ||||| Sbjct 152673 ATTTAAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGAGGAGG 152719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || || ||||||| ||||||| ||||||||||| | || || ||| | | Sbjct 152721 ATGTAAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCT 152780 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||| || || |||| ||||||||||| || || || ||| Sbjct 152781 GACTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAA 152840 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || || ||||| ||| | | || || |||| | || || ||||| Sbjct 152841 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAT 152900 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||| ||||| || ||||||| || || ||||| | ||||| Sbjct 152901 ATCTAAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGAGGAGG 152947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || ||| | ||||| |||| || ||||| || || | || || ||| | | Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||| || || |||||||||||||||| || ||||||||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAA 153068 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || || ||||| ||| | | || || |||| | || || |||||| Sbjct 153069 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAC 153128 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||| ||||| || ||||||| || || |||| | ||||| Sbjct 153129 ATCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 153175 >seq130 Length=530367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || || ||||||| ||||||| ||||||||||| | || || ||| | | Sbjct 6835 ATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTCT 6776 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || ||| || || |||| |||||||| || || || || ||| Sbjct 6775 GATTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAA 6716 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || |||||||| ||| | | || || |||| | || ||||||||| Sbjct 6715 TAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTATAAC 6656 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||| ||| || |||||||||| ||| |||| | ||||| Sbjct 6655 ATCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGG 6609 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| |||| || ||||||||||| | || || ||| | |||| | | |||| Sbjct 7048 AAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCCGATTCTATTGAAAAT 6989 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| || || |||||||||||||||| || || |||||| || | || || || Sbjct 6988 GTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAATAAAGATTAATTTTC 6929 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || ||| | | || ||| |||| | || ||||| || ||| |||| ||||| Sbjct 6928 GCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAATATTTAAAAAGAATCC 6869 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || |||| | ||||| Sbjct 6868 ACTCTCCATTTAGTATTAAGATTAAGAGGAGG 6837 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || || ||||||| | || || ||||||||||| | || || ||| || | Sbjct 8942 ATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTCT 9001 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || ||| || || |||| ||||||||||| || || || ||| Sbjct 9002 GATTCCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAA 9061 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || |||||||| ||| | | || || |||| | | || |||||||| Sbjct 9062 TAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAAT 9121 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||| ||| || |||||||||| || |||| | ||||| Sbjct 9122 ATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGG 9168 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| |||| || ||||| ||||| | || || ||| | | || | | |||| Sbjct 6592 AAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTCTGATTCCATTGAAAAT 6533 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| || || |||||||||||||||| || || |||||| || | || || || Sbjct 6532 GTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAATAAAGATTAATTTTC 6473 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || ||| | | || ||| |||| | || ||||||||||| |||| ||| Sbjct 6472 GCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAACATCTAAAAAGAAAGT 6413 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||||| || |||| | ||||| Sbjct 6412 ACCTTACACTTGGTCTTAAGATTAAGAGGAGG 6381 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || || ||||||| |||| || ||||||||||| | || || ||| | | Sbjct 8714 ATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCT 8773 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || ||| || || |||||||||||||||| || || || ||| Sbjct 8774 GATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAA 8833 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || || || || ||| | | || ||| |||| | || ||||| || Sbjct 8834 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAAT 8893 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||| ||||| || || || || || || |||| | ||||| Sbjct 8894 ATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGG 8940 >seq141 Length=555024 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 139077 ACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACA--ATT 139134 ||| || || |||| ||||| || ||||||||||| | | ||||| | | | ||| Sbjct 68218 ACATATAGATGCTAAATTGCAAACAGCCACTTCGTCTT--TAGATGTATACTAAATAATT 68275 Query 139135 TCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTA 139194 || | ||| |||||| | || || |||||||||| || |||| |||| |||| Sbjct 68276 TCAGTACATAAATTAGATTGTTAAATTGTTCCTAAATTTTTTTAATTGGACTTTCTGTTA 68335 Query 139195 CAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 ||||||||||| || | |||||| || || |||||||| Sbjct 68336 CAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTC 68373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895980368640