Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq130 199 6e-46 seq167 150 3e-31 seq249 138 2e-27 seq129 120 5e-22 >seq130 Length=530367 Score = 199 bits (220), Expect = 6e-46 Identities = 187/238 (79%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||| ||||| |||||||| |||||| | ||||| ||| | || Sbjct 7062 TGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCCG 7003 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| ||||||| ||| |||||| || |||||||| ||||| || |||||| Sbjct 7002 ATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAAT 6943 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||| ||||||| ||| ||||| ||| | ||||| |||| Sbjct 6942 AAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAATA 6883 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||||| ||| |||||||||||||| ||||||||||||| | ||||| || Sbjct 6882 TTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAATGTAAATTTT 6825 Score = 190 bits (210), Expect = 3e-43 Identities = 185/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||| ||||| |||||||| |||||| | ||||| ||| | | Sbjct 8715 TGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCTG 8774 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| ||||||| ||| |||||| || |||||||| ||||| || || ||| Sbjct 8775 ATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAAT 8834 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||| ||||||| ||| ||||| ||| | ||||| |||| Sbjct 8835 AAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAATA 8894 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||||| ||| |||||||||||||| ||||||||||||| | ||||| || Sbjct 8895 TTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAATGTAAATTTT 8952 Score = 154 bits (170), Expect = 2e-32 Identities = 179/241 (74%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||| ||||| |||||||| |||||| | || || ||| | | Sbjct 6606 TGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTCTG 6547 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| ||||||| ||| |||||| || |||||||| ||||| || |||||| Sbjct 6546 ATTCCATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAAT 6487 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||| ||||||| ||| ||||| ||| | |||||||| | Sbjct 6486 AAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAACA 6427 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTGA 146271 | |||||||| || | || || || ||| ||||||||||||| |||| ||||| Sbjct 6426 TCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGG---ATAATGATTGA 6370 Query 146272 A 146272 | Sbjct 6369 A 6369 Score = 147 bits (162), Expect = 3e-30 Identities = 168/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||| || || |||||||| |||||| | ||||| ||| | Sbjct 8943 TGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTCTG 9002 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| ||||||| ||| ||||| || ||||||||| ||||| || || ||| Sbjct 9003 ATTCCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAAT 9062 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||| ||||||| || ||||| ||| | |||||||||| Sbjct 9063 AAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAATA 9122 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | |||||||| || | || || || ||| ||||||||||||| Sbjct 9123 TCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGG 9168 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||| ||||| |||||||| ||||| | || || ||| | | Sbjct 6834 TGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTCTG 6775 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| ||||||| ||| |||||| || ||||||||| || || || || ||| Sbjct 6774 ATTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAAT 6715 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||| ||||||| || ||||| ||| | |||||||| | Sbjct 6714 AAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTATAACA 6655 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||| || | || || ||||| ||||||||||||| | ||||| || Sbjct 6654 TCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGGAATGTAAATTTT 6597 Score = 145 bits (160), Expect = 1e-29 Identities = 177/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 || |||| ||| | ||||| ||||| |||||||| ||||| | || || ||| ||| | Sbjct 7290 TGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCATC-C 7232 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||| | ||| |||| || ||| |||||| || ||||||||| || || || || ||| Sbjct 7231 GATTCCATTGAAAACGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAA 7172 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||| | ||||| || || ||| ||||||| || ||||| ||| | || |||||| Sbjct 7171 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACTTTATCCGACTATAAT 7112 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || |||||||| || | || ||||| ||| ||||||||||||| | ||||| || Sbjct 7111 ATCTAAAAAGAAAGTACCTTACACTTAGTCTTAAGATTAAGAGGAGGAATGTAAATTTT 7053 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||| ||||| |||||||| |||||| | || || ||| | | Sbjct 8487 TGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTCTG 8546 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| ||||||| ||| |||||| || ||||||||| || || || || ||| Sbjct 8547 ATTCCATTGAAAATGTCAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAAT 8606 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||| |||| || || ||||| ||| | || ||||||| Sbjct 8607 AAAGATTAATTTTCGCTGGAAAATAATTGGAAGACGGAAGAACTTTATCCGACTATAATA 8666 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||| || | || |||||||| ||||||||||||| | ||||| || Sbjct 8667 TCTAAAAAGAAAGTACCTTACACTTAGTATTGAGATTAAGAGGAGGAATGTAAATTTT 8724 Score = 120 bits (132), Expect = 5e-22 Identities = 165/228 (72%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 146036 AATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGA---TGTAGAACATAACGA 146092 ||| ||| | ||||| ||||| |||||||| ||| |||| | | || |||| || Sbjct 13640 AATTTTCGTTAAAACCTTAACCGGAAAAACTATT--TATTTAAACTTTAATTCATAT-GA 13696 Query 146093 TACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACA 146152 | | ||| |||| || ||| |||||| || ||||||||| || || || || ||| | Sbjct 13697 TTCCATTGAAAACGTTAAAGGTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAATA 13756 Query 146153 AAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATAT 146212 |||| | ||||| || || ||| ||||||| || ||||| ||| | |||||||| || Sbjct 13757 AAGATTAATTTTCGCTGGAAAAAAATTAGAAGACGGAAGAACTTTATCCGATTATAACAT 13816 Query 146213 ACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 |||||||| || | || || ||||| | |||||||||||||| Sbjct 13817 TTAAAAAGAAAGTACCTTACACTTGTTATTAAGTTTAAGAGGAGGTAA 13864 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 146060 AAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATAAAAT 146119 |||||| |||||||| |||| || | ||| ||||| ||||||||||| |||||| Sbjct 11393 AAAAACCATTACTATAAATGTGGAGCCATCTGATTCTATTGAAAATGTAAAAGCTAAAAT 11452 Query 146120 ACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATT 146179 || |||||||| ||||| || || ||| ||||| | |||||||| || ||| ||| Sbjct 11453 TTAAGACAAAGAAGGAATTCCCCCTGACCAATAAAGATTGATTTTTGCCGGAAAATCATT 11512 Query 146180 AGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGT 146239 ||| || ||||| ||| | |||||||| || |||||||| || | | |||| Sbjct 11513 AGAAGACGGAAGAACATTATCTGATTATAACATTTAAAAAGAAAGTACCTTAAAACTAGT 11572 Query 146240 ATTACGATTAA 146250 ||| |||||| Sbjct 11573 TTTATGATTAA 11583 >seq167 Length=324310 Score = 150 bits (166), Expect = 3e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| || | ||||| ||||| |||||||| || ||| | || || ||| | | Sbjct 152950 TGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCTG 153009 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| ||| |||||| || |||||||| || || ||||||||| Sbjct 153010 ACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAAT 153069 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||| ||||||| || ||||| ||| | || ||||| | Sbjct 153070 AAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAACA 153129 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | |||||||||| ||| | || ||||| ||| ||||||||||||| Sbjct 153130 TCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGG 153175 >seq249 Length=567749 Score = 138 bits (152), Expect = 2e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | ||||| | || || ||||| || || |||| || ||| | || Sbjct 154684 TGTAAATTTTCGTCAAAACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAGCTTCCG 154743 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || |||| |||| || ||| ||||| || ||||||||| || || || |||||| Sbjct 154744 ATTCTATCGAAAACGTCAAAGCCAAAATCTAAGATAAAGAAGGTATCCCCCCTGATCAAT 154803 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || ||| ||||||| ||| ||||| ||| | ||||| |||| Sbjct 154804 AAAGATTAATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTACAATA 154863 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | |||||||||| || | || ||||| ||| ||||||||||||| Sbjct 154864 TCTAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGG 154909 >seq129 Length=365655 Score = 120 bits (132), Expect = 5e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146044 TAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAA 146103 ||||||| ||||| ||||||| ||| || || | | ||| | || || ||| ||| Sbjct 254848 TAAAAACCTTAACTGGAAAAAAAATAACACTTAAGGCCGAATTTTCGGACACAATTGAAA 254789 Query 146104 ATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 || ||||| |||||| | |||| || | || |||||| || |||| || |||| Sbjct 254788 ATTTAAAAGCCAAAATATTTAATGAAGATGGAACACCTCCCGATTAATAAAGGCTAATTT 254729 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 ||||||| || |||||||| ||| | ||||| ||| | |||| |||||| |||||||| Sbjct 254728 TTGCAGGAAAGCAATTAGAAGATGAAAGAACTTTATCTGATTGTAATATTTAAAAAGAAA 254669 Query 146224 CGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || | |||||||| || | |||||||||| Sbjct 254668 GTACCTTGCATTTAGTTTTGAGGCTAAGAGGAGG 254635 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| | | ||||||| ||||| ||||||||||| || | | |||||| | | Sbjct 253316 TGGAAATTTACGTAAAAACTTTAACGGGAAAAACAATCACCCTCTACGTAGAAGCTTCAG 253257 Query 146092 ATACTATTCAAA-ATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 | || || ||| ||||| ||| ||||| || |||||||| ||||| || || ||| Sbjct 253256 AGACAATAGAAATTTGTAAGAAA-AAAATTCAGAGCAAAGAAGGAATTCCGCCTGACCAA 253198 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||| || |||||||| || || | || || || | ||| ||| | | ||||| Sbjct 253197 TAAAGGCTTATTTTTGCGGGACAATAGTTGGAAGACGAAGGAAGTTTAGCCTAATATAAA 253138 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||| |||||||| ||| | || || || || || | ||||| || Sbjct 253137 ATATAAAAAGAAAGCACTTTGCACTTGGTTTTGAGACTTAGAGGGGG 253091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786163569800960