Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq130 138 9e-28 seq167 127 2e-24 seq249 96.9 3e-15 >seq130 Length=530367 Score = 138 bits (152), Expect = 9e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | | || ||||| || ||||||||||||| ||| || ||||| | Sbjct 8941 TCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGA 8882 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | || ||| ||||| | || ||||||| || || || || Sbjct 8881 TAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGG 8822 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || |||||||||| |||||| | ||||||| |||| | || |||||| ||| | Sbjct 8821 AATTCCTTCTTTGTCTTA-AATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAA 8763 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || | ||| |||||||| ||||||||||||||||| || || | |||| Sbjct 8762 CATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | | || ||||| || ||||||||||||| ||| || ||||| | Sbjct 6836 TCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGA 6895 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | || ||| ||||| | || ||||||| ||||| || || Sbjct 6896 TAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGG 6955 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || |||||||||| |||||| | ||||||| |||| | || || ||| ||| | Sbjct 6956 AATTCCTTCTTTGTCTT-AAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAA 7014 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || | ||| |||||||| |||||||||||||| || || || | |||| Sbjct 7015 CATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 7064 Score = 114 bits (126), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 29552 ATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTAT 29611 ||| || |||||| || || | | ||||| || | || |||||||| ||||||| Sbjct 6373 ATCATTATCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTAT 6432 Query 29612 AATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGAT 29671 |||| | | || | ||| || | || ||| ||||| | || ||||||| |||| Sbjct 6433 AATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGAT 6492 Query 29672 CCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAA 29730 | || ||||| || |||||||||| |||||| | ||| ||| |||| | | |||||| Sbjct 6493 CAGGGGGAATTCCTTCTTTGTCTT-AAATTTTAGCTTTAACATTTTCAATGGAATCAGAA 6551 Query 29731 AGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || | ||| || ||||| |||||||||||||| || || || | |||| Sbjct 6552 GATTCAACGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 6608 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | || ||||| || | || |||||||| ||||||||||| | Sbjct 6608 TCCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGA 6667 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | || ||| || ||| | || ||||||| || || || || Sbjct 6668 TAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGG 6727 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||| ||||| |||| |||||| | ||| ||| |||| | | |||||| ||| | Sbjct 6728 GATACCTTCTTTATCTTA-AATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAA 6786 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || | || |||||||| || |||||||||||||| || || | |||| Sbjct 6787 CGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACATT 6836 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | || || || || | || |||||||| || ||||| || | Sbjct 8713 TCCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGGA 8654 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | || ||| ||||| | || ||||||| || || || || Sbjct 8653 TAAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGG 8594 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||| ||||| |||| |||||| | ||||||| |||| | | |||||| ||| | Sbjct 8593 GATACCTTCTTTATCTTA-AATTTTAGCTTTGACATTTTCAATGGAATCAGAAGATTCAA 8535 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 | || | ||| || ||||| |||||||||||||| || || || | |||||| ||| Sbjct 8534 CGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATTTTTAAA 8479 >seq167 Length=324310 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | | || ||||| | ||||||||||||| |||||| ||||| | Sbjct 152719 CCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGAT 152660 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | || || | || ||| ||||| | || ||||||| || || || || Sbjct 152659 AAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 152600 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| |||||| |||| | || |||||| ||| || Sbjct 152599 ATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGACG 152540 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || ||||| || |||||||||||||| || || | |||||| Sbjct 152539 TCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATTTT 152490 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | | || || || | ||||||||||||| |||||||| || | Sbjct 153176 TCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGA 153117 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | || ||| || || | || ||||||| ||||| || || Sbjct 153116 TAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGG 153057 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || |||||||||| |||||| | ||| ||| |||| | || ||||||| ||| | Sbjct 153056 GATTCCTTCTTTGTCTT-AAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAA 152998 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | ||| || ||||| |||||||| ||||| ||||| || | ||| Sbjct 152997 CGTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | | || || || | ||||||||||||| || ||||| || | Sbjct 152947 CCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGAT 152888 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || | || ||| || || | || ||||||| || || || ||| Sbjct 152887 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGGA 152828 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| |||| |||||| | ||| ||| |||| | | ||||||| ||| || Sbjct 152827 ATTCCTTCTTTATCTT-AAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAAC 152769 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| |||||||| || ||||| |||||||| || || | ||| Sbjct 152768 ATCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 >seq249 Length=567749 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | | || || || | ||||||||||||| || || ||||| | Sbjct 154910 TCCTCCTCTTAATCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGA 154851 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | || ||| || || | || ||||||| ||||| || || Sbjct 154850 TAAAGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGG 154791 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| |||| | ||| |||||| |||| | || || ||| ||| || Sbjct 154790 GATACCTTCTTTATCTTAGATTTTGGCTTTGACGTTTTCGATAGAATCGGAAGCTTCGAC 154731 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || |||||||| || || | |||||| || || || | |||||| Sbjct 154730 GTCAAGGGTGATAGTTTTCCCGGTAAGGGTTTTGACGAAAATTTACATTTT 154680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217847880608