Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq167 185 2e-41 seq130 165 2e-35 >seq167 Length=324310 Score = 185 bits (204), Expect = 2e-41 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || ||||||||||||| | | ||||||||| | ||| |||||||| | |||||||| | Sbjct 152952 ACATACCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGT 152893 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||||| | |||| |||||||||| || |||||| || || |||| ||||| ||| || | Sbjct 152892 CAGATAAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAG 152833 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || |||||||| ||||||| ||| || ||||| ||||||||||| | ||| || || Sbjct 152832 GGGGAATTCCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATT 152773 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || |||||||| || || || || || || || || || || || | ||| Sbjct 152772 CAACATCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | |||||||| | ||| |||||||| | || ||||| |||||| Sbjct 153175 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGAT 153116 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| |||||||||| || |||||| || || |||| ||||| |||||| || || Sbjct 153115 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGGG 153056 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || |||| ||| || ||||| ||||||||||| | ||| || ||| || Sbjct 153055 ATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCAACG 152996 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || || || || || || || ||||| || | ||| Sbjct 152995 TCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 Score = 163 bits (180), Expect = 6e-35 Identities = 185/247 (75%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || ||||||||||||| | | ||||| || | || |||||||| | || || |||| Sbjct 152724 ACATACCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAAT 152665 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||||| |||| |||||||||| || ||||||||| || |||| ||||| ||| || | Sbjct 152664 CAGATAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAG 152605 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || |||||||| || ||||| || || ||||| || |||||||| | ||| | || Sbjct 152604 GGGGGATTCCTTCTTTGTCTTGGATTTTAGCTTTGACGTTTTCAATAGAGTCAGAGGATT 152545 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 | || |||||||| || || || || || || || || || || || | |||| || ||| Sbjct 152544 CGACGTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATT-TTTTAT 152486 Query 82819 TTTTCTA 82825 |||| || Sbjct 152485 TTTTTTA 152479 >seq130 Length=530367 Score = 165 bits (182), Expect = 2e-35 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | || |||||||| | ||| |||||| | |||||||| || ||| Sbjct 8712 CCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGGAT 8653 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| |||||||| | || ||||||||| || |||| ||||| ||| || || || Sbjct 8652 AAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 8593 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||||| ||| || ||||| ||||||||||| | |||| || ||| || Sbjct 8592 ATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCAGAAGATTCAACG 8533 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTT 82822 || ||||| || || || || || || || || || || || | |||| ||| | |||| Sbjct 8532 TCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATTTTTAAAGTTTT 8474 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || ||||| |||||||| | ||||| ||||| ||| Sbjct 6837 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 6896 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| || ||||||| || ||||||||| || |||| ||||| |||||| || || Sbjct 6897 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGA 6956 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || |||| ||| || ||||| ||||||||||| | ||| || ||| || Sbjct 6957 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAACA 7016 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || || || || || || || || || || | |||| Sbjct 7017 TCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 7064 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | ||||| || ||||| |||||||| | ||||| ||||| ||| Sbjct 8940 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 8881 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| || ||||||| || ||||||||| || |||| ||||| ||| || || || Sbjct 8880 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGA 8821 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || |||| ||| || ||||| ||||||||||| | |||| || ||| || Sbjct 8820 ATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAACA 8761 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || || || || || || || || || || | |||| Sbjct 8760 TCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | || ||||| | ||| |||||| | ||||||||||||||| Sbjct 9168 CCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATATTATAATCAGAT 9109 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| |||||||||| || |||||| ||||| |||| ||||| ||| || || || Sbjct 9108 AAGGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGGA 9049 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| ||||||| ||| || ||||| ||||||||||| | |||| | ||| || Sbjct 9048 ATTCCTTCTTTATCTTAAATTTTGGCTTTGACATTTTCAATGGAATCAGAGGATTCAACA 8989 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || || || ||||| || || || || || | |||| Sbjct 8988 TCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTAACGAAAATTTACATT 8941 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | | || ||||| | ||| |||||| | || |||||||||||| Sbjct 6381 CCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGAT 6440 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| || ||||||| || ||||||||| || |||| ||||| |||||| || || Sbjct 6441 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGA 6500 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || |||| ||| || ||||| ||||||||||| | |||| || ||| || Sbjct 6501 ATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAACG 6560 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || || || || || || || || || || | |||| Sbjct 6561 TCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 6608 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | || || ||||| | ||| |||||| | || |||||||||||| Sbjct 6609 CCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGAT 6668 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | |||| |||||||||| || |||||| ||||| |||| ||||| ||| || || || Sbjct 6669 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGGG 6728 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||||| ||| || ||||| ||||||||||| | |||| || ||| || Sbjct 6729 ATACCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAACG 6788 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || || || || || || || || || || | |||| Sbjct 6789 TCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACATT 6836 Score = 123 bits (136), Expect = 5e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||||| | ||| |||||| | || ||||||||||||| | |||| | |||||| Sbjct 10885 ACTAAGTATAAGGTACTTTCTTTTTAAATGTTATAATCAGATAAAGTTCTTTCATCTTCT 10826 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | || ||||||| | || |||| ||||| |||||| || || |||||||| ||||||| | Sbjct 10825 AATTATTTTCCATCTAAAATTATTCTTTATTGATCAGGGGGAATTCCTTCTTTATCTTAA 10766 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 || || |||| ||| ||||||| ||||||| Sbjct 10765 ATTTTACCTTTGACAATTTCAATAGTATCAT 10735 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 |||||| | || ||||||||||||| |||| |||||||||| | |||||| ||||| Sbjct 11555 TTCTTTTTAAATGTTATAATCAGATAATGTTCTTCCGTCTTCTAATGATTTTCCGGCAAA 11496 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 || | ||||| ||| || || || |||||||| || |||| ||| || ||||||||||| Sbjct 11495 AATCAATCTTTATTGGTCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTTACATT 11436 Query 82739 TTCAATCGTATCA 82751 |||||| | |||| Sbjct 11435 TTCAATAGAATCA 11423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823577057632