Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq276 125 2e-23 seq152 84.2 5e-11 >seq276 Length=142410 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| | || || || || || | ||||||||||| |||||||| ||| | | Sbjct 49030 GATTTTGTTTTATTTAACAGACAGCCCACTTTGCATAAAATGAGTATGATGGGTCACAGA 48971 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAAT 305443 || ||||| ||| |||| | || || |||||||| || | | || ||||||||| Sbjct 48970 GTGAAAGTTTTACCTGGGTCAACTTTCAGATTAAATTTATCCGTTACCACTCCTTATAAT 48911 Query 305444 GCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||||||||||||||||||||||||||| || |||||||| Sbjct 48910 GCTGATTTTGATGGAGATGAAATGAATATGCACGTTCCTCAATC 48867 >seq152 Length=1988609 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 351555 TTCTTGGCACAATTAGTCATTTAAGAAGATTACAGACGCCTATTGATAAAACTACCA--- 351611 || ||| ||||| ||||| ||||||||| | | ||||||| ||| || ||| Sbjct 246879 TTTTTGCAACAATGAGTCACTTAAGAAGACTTAATGCGCCTATA---AAAGCTTCCACAA 246935 Query 351612 AAATGGTAAAACCAAGAAAATTACATCTTTCTAGCTATGGTTACATTTGTCCTCAGGAGT 351671 |||| | |||||||||| |||||||| || | ||| |||||||| || Sbjct 246936 AAATCGCAAAACCAAGACAATTACATAACACTCATTTCGGTATGATTTGTCCAGCAGAAA 246995 Query 351672 CTCCTGAAGGAGCTTCAATTGGTATTGTTAAAAATTTG 351709 |||| |||||||| |||||||||||||||||||||| Sbjct 246996 CTCCCGAAGGAGCCAAAATTGGTATTGTTAAAAATTTG 247033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808420660768