Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq167 104 2e-17 seq130 98.7 7e-16 >seq167 Length=324310 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || | ||| || || |||| |||| ||||||| ||||| || || || Sbjct 153175 CCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAGAT 153116 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | |||| || |||| ||||||||| ||||| || | | ||||| | || Sbjct 153115 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGGGGG 153056 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | || ||||| || | | ||| ||||| || Sbjct 153055 ATTCCTTCTTTGTCTTAAATTTT-AGCTTTAACATTTTCAATAGAGTCAGAAGATTCAAC 152997 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| | ||||| ||||| || ||||| ||||| ||||| || | |||| Sbjct 152996 GTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACATA 152948 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| | ||| || ||||||| ||| ||||||| ||||||||||| || Sbjct 152720 ACCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGA 152661 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || |||| |||||| || ||||| || | | || || | || Sbjct 152660 TAAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGG 152601 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| | || || | || | | ||| ||||| | Sbjct 152600 GATTCCTTCTTTGTCTTGGATTTT-AGCTTTGACGTTTTCAATAGAGTCAGAGGATTCGA 152542 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| | ||||| ||||| || ||||| ||||| || ||||| | ||| Sbjct 152541 CGTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACAT 152493 >seq130 Length=530367 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || | || ||||| |||| || || ||||||| ||||| ||||| || Sbjct 6609 CCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGAT 6668 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | |||| || |||| ||||||||||||||| || | | || || | || Sbjct 6669 AAAGTTCTTCCGTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGGG 6728 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || |||||| | || ||||| || | || || ||||| || Sbjct 6729 ATACCTTCTTTATCTTAAATTTT-AGCTTTAACATTTTCAATGGAATCAGAAGATTCAAC 6787 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | || || ||||| || ||||| ||||| || || || | ||| Sbjct 6788 GTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACAT 6835 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || | ||| ||||| |||| || || ||||||| ||||| ||||| || Sbjct 6381 CCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGAT 6440 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | | || || |||| |||||| || ||||| || | | ||||| | || Sbjct 6441 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGA 6500 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | || ||||| || | || || ||||| || Sbjct 6501 ATTCCTTCTTTGTCTTAAATTTT-AGCTTTAACATTTTCAATGGAATCAGAAGATTCAAC 6559 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | || || ||||| || ||||| ||||| || || || | ||| Sbjct 6560 GTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 6607 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || | ||| || ||||| |||||| ||||||| || ||||||||||| Sbjct 6837 CCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGAT 6896 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | | || || |||| |||||| || ||||| || | | ||||| | || Sbjct 6897 AAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGA 6956 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | || |||| || | | ||| ||||| || Sbjct 6957 ATTCCTTCTTTGTCTTAAATTTT-AGCTTTGACATTTTCAATAGAATCGGAAGATTCAAC 7015 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || ||||| ||||| || || || | ||| Sbjct 7016 ATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACAT 7063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702846248960