Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq167 109 1e-18 seq130 105 2e-17 seq249 96.9 8e-15 >seq167 Length=324310 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || |||||||| || ||| ||||||| | | ||| Sbjct 152736 AAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCTGACTCCATTGAAAAT 152795 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||| |||| |||||||||||| || ||| ||||| | || || Sbjct 152796 GTTAAAGCTAAA-ATTTAAGATAAAGAAGGAATTCCCCCTGACCAATAAAGATTAATTTT 152854 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| | || ||||| ||||| ||||| | || || || || | ||||| || Sbjct 152855 CGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAATATCTAAAAAGAATC 152914 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||| | ||| | ||||| ||| Sbjct 152915 CACTTTACACTTAGTTTTAAGA 152936 Score = 109 bits (120), Expect = 1e-18 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || |||||||| ||||||||||| || ||| ||||||| | | Sbjct 152957 TTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCTGACTCTAT 153016 Query 206238 CGAATCAG-TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| | |||||| ||| ||| |||| ||||||||||| || || ||||| Sbjct 153017 TGAAAATGTTAAAGCTAAA-ATTTAAGACAAAGAAGGAATCCCCCCCGATCAATAAAGAT 153075 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || ||||||||||| | || ||||| ||||| ||||| | || || ||| || | | Sbjct 153076 TAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAACATCTAAA 153135 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 |||| || ||| | ||| | || || ||| Sbjct 153136 AAGAATCCACTTTACACTTAGTCTTAAGA 153164 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||||||||| || ||| |||||| | | ||| Sbjct 152508 AAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCCTCTGACTCTATTGAAAAC 152567 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| ||||||||||| || ||| ||||| | || || Sbjct 152568 GTCAAAGCTAAA-ATCCAAGACAAAGAAGGAATCCCCCCTGACCAATAAAGATTAATTTT 152626 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| | || ||||| ||||| || || | ||||||||| | | ||||| || Sbjct 152627 CGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTACAACATTTAAAAAGAATC 152686 Query 206364 TAC 206366 || Sbjct 152687 CAC 152689 >seq130 Length=530367 Score = 105 bits (116), Expect = 2e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || ||||| || || ||| |||||| | | ||| Sbjct 8729 AAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCTGATTCTATTGAAAAT 8788 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||| |||| |||||||||||| || ||| ||||| | || || Sbjct 8789 GTCAAAGCTAAA-ATTTAAGACAAAGAAGGAATTCCCCCTGACCAATAAAGATTAATTTT 8847 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| | || ||||||||||| ||||| |||||||||| | | ||||| || Sbjct 8848 CGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAATATTTAAAAAGAATC 8907 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||| || | || || ||| Sbjct 8908 CACTCTCCATTTAGTATTAAGA 8929 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| || ||||| || || ||| ||| || | | ||| Sbjct 7049 CAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCCGATTCTATTGAAAA 6990 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| ||| |||| |||||||||||| || || ||||| | || | Sbjct 6989 TGTCAAAGCTAAA-ATTTAAGACAAAGAAGGAATTCCCCCTGATCAATAAAGATTAATTT 6931 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| ||||| | || ||||||||||| ||||| |||||||||| | | ||||| | Sbjct 6930 TCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAATATTTAAAAAGAAT 6871 Query 206363 CTACTCTTCACCTTGTTTTGAGA 206385 | ||||| || | || || ||| Sbjct 6870 CCACTCTCCATTTAGTATTAAGA 6848 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| || ||||| || || ||| |||||| | | ||| Sbjct 6593 CAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTCTGATTCCATTGAAAA 6534 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| ||| |||| |||||||||||| || || ||||| | || | Sbjct 6533 TGTTAAAGCTAAA-ATTTAAGACAAAGAAGGAATTCCCCCTGATCAATAAAGATTAATTT 6475 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 |||| ||||| | || ||||||||||| ||||| | ||||| ||| || | ||||| Sbjct 6474 TCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAACATCTAAAAAGA 6417 >seq249 Length=567749 Score = 96.9 bits (106), Expect = 8e-15 Identities = 181/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 206131 AAATATATTTTAAGAAATATATAAA-GTAAGGCTAAAATGTACCAG-ATATTTTG--CAA 206186 ||||||||| || ||||| |||| |||| ||||| | | | ||||| ||| Sbjct 154640 AAATATATTAAAATAAATAAATAATTGTAAATTAAAAATAAAAATGTAAATTTTCGTCAA 154699 Query 206187 AACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT 206246 ||| || || || ||||| ||||| | || || ||| ||| || | ||||| || Sbjct 154700 AACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAGCTTCCGATTCTATCGAAAACGT 154759 Query 206247 -AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCG 206305 ||||| ||| || |||| |||||||| || || || ||||| | ||||||| Sbjct 154760 CAAAGCCAAA-ATCTAAGATAAAGAAGGTATCCCCCCTGATCAATAAAGATTAATCTTCG 154818 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 ||||||| | || ||||||||||| ||||| | |||||||| || | ||||| || | Sbjct 154819 CCGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTACAATATCTAAAAAGAATCCA 154878 Query 206366 CTCTTCACCTTGTTTTGAGA 206385 | | ||| | ||||| ||| Sbjct 154879 CCTTACACTTAGTTTTAAGA 154898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816439081248