Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq249 150 2e-31 seq130 138 1e-27 seq167 127 2e-24 >seq249 Length=567749 Score = 150 bits (166), Expect = 2e-31 Identities = 191/262 (73%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 25144 AAATTATATAAGTAGTTTTCAATTAAACA---ACATGCAAGTGTTTGTAAAAACATTAAC 25200 ||| || |||| || || | ||||||| | | ||| || | || || ||||| | || Sbjct 154649 AAAATAAATAAATAATTGTAAATTAAAAATAAAAATGTAAATTTTCGTCAAAACCCTTAC 154708 Query 25201 CGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAA 25260 ||| ||| | ||||| | || |||||||| |||| ||||||| | || ||| || Sbjct 154709 CGGGAAAACTATCACCCTTGACGTCGAAGCTTCCGATTCTATCGAAAACGTCAAAGCCAA 154768 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 ||| |||||||| ||||| || || ||||| ||||| | || | || ||| ||| | Sbjct 154769 AATCTAAGATAAAGAAGGTATCCCCCCTGATCAATAAAGATTAATCTTCGCCGGAAAATA 154828 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | | ||||||| |||| | | ||||||||||| |||||||||||||| | || || Sbjct 154829 ATTAGAAGATGGAAGAACTTTATCTGATTACAATATCTAAAAAGAATCCACCTTACACTT 154888 Query 25381 AGTGTTAAGATTGAGAGGAGGA 25402 ||| |||||||| ||||||||| Sbjct 154889 AGTTTTAAGATTAAGAGGAGGA 154910 >seq130 Length=530367 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || ||||| ||||| |||||| | || || | || || ||| | | Sbjct 7063 ATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCC 7004 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| |||| || | || ||| |||||| || ||||| || || || || ||||| Sbjct 7003 GATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAA 6944 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| || || ||| || | ||||||| |||| | | |||||||||| Sbjct 6943 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAAT 6884 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| ||||||||||||| | |||||||| |||||||| |||||||||| Sbjct 6883 ATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAA 6835 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || ||||| ||||| |||||| | || || | || || ||| | Sbjct 8714 ATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCT 8773 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| |||| || | || ||| |||||| || ||||| || || || || || || Sbjct 8774 GATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAA 8833 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| || || ||| || | ||||||| |||| | | |||||||||| Sbjct 8834 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAAT 8893 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| ||||||||||||| | |||||||| |||||||| |||||||||| Sbjct 8894 ATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGAA 8942 Score = 116 bits (128), Expect = 3e-21 Identities = 185/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 25143 AAAATTATATAAG-TAGTTTTCAATTAAACAAC-ATGCAAGTGTTTGTAAAAACATTAAC 25200 ||||||| | || || || |||| ||| || ||| || | || || ||||| ||||| Sbjct 7325 AAAATTAAAAAAAATAATTCGCAATAAAAAAAATATGTAAATTTTCGTTAAAACCTTAAC 7266 Query 25201 CGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAA 25260 ||||||| | || || | || || ||| | |||| | || || | || ||| || Sbjct 7265 CGGAAAAACTATTACCTTAGACGTTGAATCATCCGATTCCATTGAAAACGTTAAAGCTAA 7206 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| |||||||| ||||| || || || || ||||| | |||| || || ||| | Sbjct 7205 AATTTAAGATAAAGAAGGTATCCCCCCTGACCAATAAAGATTAATTTTCGCTGGAAAATA 7146 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | | ||||| | |||| | | ||| || ||||| |||||||| ||| | || || Sbjct 7145 ATTAGAAGACGGAAGAACTTTATCCGACTATAATATCTAAAAAGAAAGTACCTTACACTT 7086 Query 25381 AGTGTTAAGATTGAGAGGAGGAA 25403 ||| |||||||| |||||||||| Sbjct 7085 AGTCTTAAGATTAAGAGGAGGAA 7063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || ||||| |||||||||||| | || || | || || ||| | Sbjct 6835 ATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTCT 6776 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| | || || | || ||| |||||| |||||||| ||||| || || || || Sbjct 6775 GATTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAA 6716 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | ||| ||| || | ||||| | |||| | | ||||| || Sbjct 6715 TAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTATAAC 6656 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || |||||||| ||| | || || || || ||||| |||||||||| Sbjct 6655 ATCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGGAA 6607 >seq167 Length=324310 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||| || | || || ||||| |||||||||||| | ||||| | || |||||| || Sbjct 152490 AAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCC 152549 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || |||| || | || ||| ||||| || ||||| || || || || || Sbjct 152550 TCTGACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGAC 152609 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||||| | |||| || || ||| || | ||||| | |||| | |||||| Sbjct 152610 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTAC 152669 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||| |||||||||||||| | |||||||| ||||||||||||||||| Sbjct 152670 AACATTTAAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGAGGAGG 152719 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | ||||| ||||| ||||| |||||| | ||||| | || || ||| | Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||| || | || ||| |||||| || ||||| || || || |||||||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAA 153068 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| || ||| ||| || | ||||| | |||| | | || || || Sbjct 153069 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAC 153128 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||||||||||| | || ||||| |||||||| |||||||||| Sbjct 153129 ATCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGAA 153177 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || ||||| |||||||||||| | || || | || || ||| | Sbjct 152721 ATGTAAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCT 152780 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | || || | || ||| |||||| |||||||| || || || || || || Sbjct 152781 GACTCCATTGAAAATGTTAAAGCTAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCAA 152840 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| || ||| ||| || | ||||| | |||| | | || || ||| Sbjct 152841 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAT 152900 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||||| | || ||||| ||||||||||||||||| Sbjct 152901 ATCTAAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGAGGAGG 152947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092797660160