Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq130 134 1e-26 seq167 105 5e-18 seq249 100 2e-16 >seq130 Length=530367 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||| ||||||| || ||||| || ||||| || || ||||| | || ||| | Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||||||| ||| | || ||| |||||| ||||||||||| | ||| |||||| Sbjct 7004 CGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6945 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 | |||| | |||| || || ||| ||||||||||| | |||| | ||||||||| Sbjct 6944 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 6885 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || |||||||||| || || ||||||||||| || ||| |||||||| Sbjct 6884 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGA 6836 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||| ||||||| |||||||| || ||||| || || ||||| | || ||| | Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||||| ||| | || ||| |||||| ||||||||||| | ||| ||| || Sbjct 8773 TGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCA 8832 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 | |||| | |||| || || ||| ||||||||||| | |||| | ||||||||| Sbjct 8833 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 8892 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || |||||||||| || || ||||||||||| || ||| |||||||| Sbjct 8893 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGA 8941 Score = 120 bits (132), Expect = 2e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||| ||||||| || ||||| || ||||| || |||||||| | || ||| | Sbjct 6608 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTC 6549 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||||| ||| | || ||| |||||| ||||||||||| | ||| |||||| Sbjct 6548 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6489 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 | |||| | |||| || || ||| ||||||||||| | |||| | ||||| || Sbjct 6488 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAA 6429 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAATGAT 106494 ||| |||||||| ||| |||| || || || || ||| ||||||||||||||| Sbjct 6428 CATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGGATAATGAT 6373 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||| ||||||| |||||||| |||||||| || || ||||| | || ||| || Sbjct 8941 AATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTC 9000 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||||| ||| | || ||| |||||| || |||||||| | ||| ||| || Sbjct 9001 TGATTCCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCA 9060 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 | |||| | |||| ||| || ||| |||||||||| | ||| | ||||| || Sbjct 9061 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAA 9120 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAATGATA 106495 || |||||||| ||| |||| || || || || ||| |||||||||||||||| Sbjct 9121 TATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGGATAATGATA 9177 Score = 109 bits (120), Expect = 4e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 |||||||||| ||||||| || ||||| || ||||| || |||||||| | || || Sbjct 8479 TTTAAAAATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGA 8538 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 | | ||||| ||| | || ||| |||||| || |||||||| | ||| Sbjct 8539 ATCTTCTGATTCCATTGAAAATGTCAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCC 8598 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 ||| ||| |||| | |||| || || ||| |||| ||||| | |||| | ||| Sbjct 8599 TGACCAATAAAGATTAATTTTCGCTGGAAAATAATTGGAAGACGGAAGAACTTTATCCGA 8658 Query 106433 TTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || || |||||||| ||| |||| ||||||||||| ||| |||||||| Sbjct 8659 CTATAATATCTAAAAAGAAAGTACCTTACACTTAGTATTGAGATTAAGAGGAGGA 8713 >seq167 Length=324310 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||| |||| || |||||||| || || || || ||||| || |||| ||| | Sbjct 152489 AAAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATC 152548 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | || ||| ||| | || ||| ||||| ||||||||||| | ||| ||| Sbjct 152549 CTCTGACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGA 152608 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| |||| | |||| || || ||| |||||||||| | ||| | ||||| Sbjct 152609 CCAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTA 152668 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||| |||||||||| || |||||||||| || || || ||||||| Sbjct 152669 CAACATTTAAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGAGGAGG 152719 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||| |||||||||| ||||| || ||||| || ||||| || |||| ||| | Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || ||| ||| | || ||| |||||| ||||||||||| | ||| |||||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAA 153068 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||| | |||| || || ||| |||||||||| | |||| | || || ||| Sbjct 153069 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAC 153128 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || |||||||||| || |||| ||||| || || ||| |||||||| Sbjct 153129 ATCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGA 153176 >seq249 Length=567749 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 106255 TAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAAC 106314 |||||||| ||||||| || ||||| | || || || || || ||| | || ||| Sbjct 154678 TAAAAATGTAAATTTTCGTCAAAACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAG 154737 Query 106315 CCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTG 106374 | ||||||| | | | || ||| ||||| || |||||||| | ||| || Sbjct 154738 CTTCCGATTCTATCGAAAACGTCAAAGCCAAAATCTAAGATAAAGAAGGTATCCCCCCTG 154797 Query 106375 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATT 106434 ||||| |||| | || | || || ||| ||||||||||| | |||| | |||| Sbjct 154798 ATCAATAAAGATTAATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATT 154857 Query 106435 ACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||| || |||||||||| || |||| ||||| || || ||| |||||||| Sbjct 154858 ACAATATCTAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGA 154910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402328187823104