Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq167 123 3e-23 seq130 105 7e-18 >seq167 Length=324310 Score = 123 bits (136), Expect = 3e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || || || | |||| |||||||| |||| ||||||||| || Sbjct 152719 CCTCCTCTCAATCTTAAGACTAAATGTAAGGTGGATTCTTTTTAAATGTTGTAATCAGAT 152660 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| ||| || | | ||| || || ||||| || | | || || || || Sbjct 152659 AAGGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGG 152600 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || |||||||| ||||| ||||| |||||| | | |||| | ||| || ||||| || Sbjct 152599 ATTCCTTCTTTGTCTTGGATTTTAGCTTTGAC-GTTTTCAATAGAGTCAGAGGATTCGAC 152541 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTT 134725 ||| | ||| |||||||| |||||||| ||||||||||| |||| |||||| | ||| || Sbjct 152540 GTCCAAAGTGATGGTTTTTCCGGTTAAGGTTTTAACGAAGATTTACATTTTTTATTTTTT 152481 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||||||||| | || || || | ||||| |||||||| |||| ||||| ||||| | Sbjct 153177 TTCCTCCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTAGATGTTATAGTCAG 153118 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || | | | ||| || | | ||| || || ||||| || | | |||||||| Sbjct 153117 ATAAAGTTCTTCC-GTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGATCGGGG 153059 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| |||| |||||| ||| || || | | ||| || ||||| Sbjct 153058 GGGATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATAGAGTCAGAAGATTCA 152999 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | ||| |||||||| || ||||||||||| || ||||||| ||| Sbjct 152998 ACGTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACAAAAATTTACAT 152949 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || || || | ||||| |||||||| |||| || || ||||| | Sbjct 152947 CCTCCTCTCAATCTTAAAACTAAGTGTAAAGTGGATTCTTTTTAGATATTATAGTCAGAT 152888 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | ||| || | | ||| || || ||||| || | | || || || || Sbjct 152887 AAAGTTCTTCC-GTCTTCTAATTATTTTCCGGCGAAAATTAATCTTTATTGGTCAGGGGG 152829 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||| |||||| ||| || || | | ||| || ||||| || Sbjct 152828 AATTCCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAGTCAGAAGATTCAAC 152769 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||| ||||| ||||||||||||||||||||||||| ||| Sbjct 152768 ATCCAAAGTAATAGTTTTTCCGGTTAAAGTTTTAACGAAAATTTACAT 152721 >seq130 Length=530367 Score = 105 bits (116), Expect = 7e-18 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| | || || || | ||||| || ||| |||| || || |||||| Sbjct 7063 TTCCTCCTCTTAATCTTAAGACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGG 7122 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || ||| || | | ||| || || ||||| || | | || || || | Sbjct 7123 ATAAAGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 7182 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTG-TCGGACGATTCC 134663 | || |||||||| |||| |||||| ||| || | | ||||| ||||| ||||| Sbjct 7183 GGATACCTTCTTTATCTTAAATTTTAGCTTTAAC-GTTTTCAATGGAATCGGATGATTCA 7241 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTG 134723 ||||| | ||||| ||||| |||||||| |||||||||||||||| ||| || ||||| Sbjct 7242 ACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACATATTTTTTTTA 7301 Query 134724 TT 134725 || Sbjct 7302 TT 7303 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| | || ||| || | ||||| || ||| |||| || || |||||| Sbjct 8714 TTCCTCCTCTTAATCTCAATACTAAGTGTAAGGTACTTTCTTTTTAGATATTATAGTCGG 8655 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || ||| || | | ||| || || ||||| || | | || || || | Sbjct 8654 ATAAAGTTCTTCCGTCTTCCAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGG 8595 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||| |||||| |||||| || | | || || ||||| | Sbjct 8594 GGATACCTTCTTTATCTTAAATTTTAGCTTTGACATTTTCAATGGAATCAGAAGATTCAA 8535 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||| | |||||||||||| || ||||| ||||| |||||||||| |||||| Sbjct 8534 CGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATTTT 8483 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| | || || || | || || |||||||| |||| ||| ||||| ||| Sbjct 8942 TTCCTCCTCTTAATCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGG 8883 Query 134545 C-AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || | | | | || || | | ||| || || ||||| || | | || || || Sbjct 8882 ATAAAGTTCTTCCA-TCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGG 8824 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| |||| |||||| |||||| || | | || || ||||| Sbjct 8823 GGAATTCCTTCTTTGTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCA 8764 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | |||||| ||||| || ||||| |||||||||||||||| |||| Sbjct 8763 ACATCTAAAGTAATAGTTTTTCCAGTTAAGGTTTTAACGAAAATTTACATT 8713 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||||||||| | || ||| || | ||||| || ||| |||| ||||| || || | Sbjct 6607 TTCCTCCTCTTAATCTCAATACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAG 6666 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || | | | ||| || | | ||| || |||||||| || | | || || || Sbjct 6667 ATAAAGTTCTTCC-GTCTTCTAATTATTTTCCGGCAAAAATTAATCTTTATTGGTCAGGG 6725 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| |||| |||||| ||| || || | | || || ||||| Sbjct 6726 GGGATACCTTCTTTATCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCA 6785 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| | ||||| ||||| |||||||| |||||||||||||||| |||| Sbjct 6786 ACGTCTAAGGTAATAGTTTTTCCGGTTAAGGTTTTAACGAAAATTTACATT 6836 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | || || || | ||||| || ||| |||| ||||| || || | Sbjct 6380 TCCTCCTCTTAATCTTAAGACCAAGTGTAAGGTACTTTCTTTTTAGATGTTATAATCAGA 6439 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || | | | | || || | | ||| || || ||||| || | | ||||| || | Sbjct 6440 TAAAGTTCTTCCA-TCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGG 6498 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||| |||||| ||| || || | | || || ||||| | Sbjct 6499 GAATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTTTCAATGGAATCAGAAGATTCAA 6558 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||| | |||||||||||| || ||||| ||||| |||||||||| |||| Sbjct 6559 CGTCTAAAGTAATGGTTTTTCCAGTTAAGGTTTTGACGAAAATTTACATT 6608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||| || | | || || || || || |||||||| |||| |||||| Sbjct 9085 TTTTCCGGCAAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTTATCTTAAATTTT 9026 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 |||||| || | | || || ||||| || || | |||||| ||||| || || Sbjct 9025 GGCTTTGACATTTTCAATGGAATCAGAGGATTCAACATCTAAAGTAATAGTTTTTCCAGT 8966 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 ||||||||||||||||||| |||| Sbjct 8965 CAAAGTTTTAACGAAAATTTACATT 8941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396580565760