Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq130 109 6e-19 >seq130 Length=530367 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || || || || | || || || ||||||||| | || ||||| || Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | || ||||||||| | ||||| || |||||||| || ||||| Sbjct 8773 TGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCA 8832 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | ||||||| ||||| || || | || |||| | || || | || || || Sbjct 8833 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 8892 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | | |||| ||||||||||| ||| |||| || Sbjct 8893 TATTTAAAAAGAATCCACTCTCCATTTAGTATT 8925 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || ||||| || | || || || ||||||||| | || ||||| || Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| |||| |||| | || ||||||||| | ||||| || |||||||| || || || Sbjct 7004 CGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6945 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | ||||||| ||||| || || | || |||| | || || | || || || Sbjct 6944 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 6885 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | | |||| ||||||||||| ||| |||| || Sbjct 6884 TATTTAAAAAGAATCCACTCTCCATTTAGTATT 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308346882560