Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq167 127 2e-24 seq130 113 4e-20 >seq167 Length=324310 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| | ||||| || | || ||| | || || ||| | || Sbjct 152493 ATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCCTCT 152552 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | |||||| ||||| |||||||||||||| || || || || ||| Sbjct 152553 GACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGACCAA 152612 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | ||||| | ||| || ||| |||| |||||| | ||| | || ||||||||| Sbjct 152613 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTACAAC 152672 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||| || || ||||||||||| || || | ||| | || || || Sbjct 152673 ATTTAAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGAGGAGGTAT 152722 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| |||||| | || || || | || ||| | || || ||| | || Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| |||||| ||||||||||||| || || ||||||||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATCCCCCCCGATCAA 153068 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | ||||| | |||||| ||| |||| |||||| | || | || || || ||| Sbjct 153069 TAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAAC 153128 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || |||| || || || ||||| || || || Sbjct 153129 ATCTAAAAAGAATCCACTTTACACTTAGTCTT 153160 >seq130 Length=530367 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| | || || || |||||||| | || || ||| | ||| Sbjct 7063 ATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCC 7004 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | |||||| |||||| ||||||||||||| || || || |||||| Sbjct 7003 GATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAA 6944 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | ||||| | ||| || ||| |||| ||||| | || | ||||||||||| Sbjct 6943 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAAT 6884 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 ||| |||| || || || | ||||| || || Sbjct 6883 ATTTAAAAAGAATCCACTCTCCATTTAGTATT 6852 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| | || || || |||||||| | || || ||| | || Sbjct 8714 ATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTCT 8773 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | |||||| |||||| ||||||||||||| || || || || ||| Sbjct 8774 GATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCAA 8833 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | ||||| | ||| || ||| |||| ||||| | || | ||||||||||| Sbjct 8834 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAAT 8893 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 ||| |||| || || || | ||||| || || Sbjct 8894 ATTTAAAAAGAATCCACTCTCCATTTAGTATT 8925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| | || || || | |||||| | || || ||| | || Sbjct 6607 ATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTCT 6548 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || ||| |||||| ||||||||||||| || || || |||||| Sbjct 6547 GATTCCATTGAAAATGTTAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCAA 6488 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | ||||| | ||| || ||| |||| ||||| | || | || ||||| ||| Sbjct 6487 TAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATAAC 6428 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || |||| || |||||||| ||||| || Sbjct 6427 ATCTAAAAAGAAAGTACCTTACACTTGGTCTT 6396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || ||||| | || || || | |||||| | || || ||| | || Sbjct 8486 ATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTCT 8545 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | |||||| |||||| |||| |||||||| || || || || ||| Sbjct 8546 GATTCCATTGAAAATGTCAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAA 8605 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | ||||| | ||| || ||| ||||||||||| | || | ||||| || || Sbjct 8606 TAAAGATTAATTTTCGCTGGAAAATAATTGGAAGACGGAAGAACTTTATCCGACTATAAT 8665 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || |||| || |||||||| || || ||| Sbjct 8666 ATCTAAAAAGAAAGTACCTTACACTTAGTATTG 8698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916834293760