Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq130 107 1e-18 seq167 82.4 5e-11 seq129 82.4 5e-11 >seq130 Length=530367 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||| ||||||| || |||||| | ||||| ||| |||||| | ||||| ||| | | Sbjct 8941 AATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTC 9000 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| |||||| ||||| || |||||||| |||| || Sbjct 9001 TGATTCCATTGAAAAT--GTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGAC 9058 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | |||||||||||||||||| |||| || |||| | | | ||| || ||||| Sbjct 9059 CAATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTAT 9118 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 || ||| ||||||| || || || || ||||| || Sbjct 9119 AATATCTAAAAAGAAAGTACCTTACACTTGGTCTT 9153 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||| ||||||| || ||||| | ||||| ||| |||||| | ||||| ||| | Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| |||||| ||||| ||||||||||| |||| || Sbjct 7004 CGATTCTATTGAAAAT--GTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGAT 6947 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | |||||||| || |||||| |||| || || | | | | || ||||||||| Sbjct 6946 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTAC 6887 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 || || ||||||| |||| | ||||| || || Sbjct 6886 AATATTTAAAAAGAATCCACTCTCCATTTAGTATT 6852 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||| ||||||| || ||||| | || || ||| |||||| | || || ||| | Sbjct 6836 AATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTC 6777 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| || ||||||||| | || || Sbjct 6776 TGATTCCATTGAAAAT--GTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGAC 6719 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | |||||||||||||||||| |||| || |||| | | | || || ||||| Sbjct 6718 CAATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTAT 6659 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||||| ||||||| || || || || ||||| ||| Sbjct 6658 AACATCTAAAAAGAAAGTACCTTACACTTGGTATTG 6623 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||| ||||||| || ||||| | ||||| ||| |||||| | ||||| ||| | Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| |||||| ||||| ||||||||||| |||| || Sbjct 8773 TGATTCTATTGAAAAT--GTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGAC 8830 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | |||||||| || |||||| |||| || || | | | | || ||||||||| Sbjct 8831 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTAC 8890 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 || || ||||||| |||| | ||||| || || Sbjct 8891 AATATTTAAAAAGAATCCACTCTCCATTTAGTATT 8925 >seq167 Length=324310 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||| |||| || || ||||| | || || ||| || || | || |||||| | Sbjct 152490 AAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCC 152549 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || |||||| ||||| ||||||||||| | || || Sbjct 152550 TCTGACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGAC 152609 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | |||||||| || |||||| |||| || |||| | | | ||| || |||||| Sbjct 152610 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTAC 152669 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||| ||||||| ||| || ||||| || || Sbjct 152670 AACATTTAAAAAGAATCCACCTTACATTTAGTCTT 152704 >seq129 Length=365655 Score = 82.4 bits (90), Expect = 5e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 27885 CAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA 27944 ||||||||| ||||| || || || || | |||||||| ||| || | ||||| || Sbjct 253222 CAAAGAAGGAATTCCGCCTGACCAATAAAGGCTTATTTTTGCGGGACAATAGTTGGAAGA 253163 Query 27945 CGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | || || || | || || || ||||||| ||||||||||| ||||||||| Sbjct 253162 CGAAGGAAGTTTAGCCTAATATAAAATATAAAAAGAAAGCACTTTGCACTTGGTTTTG 253105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861150922976