Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015
-11-24] 288 sequences; 55,455,357 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq130 107 1e-18
seq167 82.4 5e-11
seq129 82.4 5e-11
>seq130
Length=530367
Score = 107 bits (118), Expect = 1e-18
Identities = 154/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||| ||||||| || |||||| | ||||| ||| |||||| | ||||| ||| | |
Sbjct 8941 AATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTC 9000
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || | ||| |||||| ||||| || |||||||| |||| ||
Sbjct 9001 TGATTCCATTGAAAAT--GTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGAC 9058
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || | |||||||||||||||||| |||| || |||| | | | ||| || |||||
Sbjct 9059 CAATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTAT 9118
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001
|| ||| ||||||| || || || || ||||| ||
Sbjct 9119 AATATCTAAAAAGAAAGTACCTTACACTTGGTCTT 9153
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||| ||||||| || ||||| | ||||| ||| |||||| | ||||| ||| |
Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| | || | ||| |||||| ||||| ||||||||||| |||| ||
Sbjct 7004 CGATTCTATTGAAAAT--GTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGAT 6947
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || | |||||||| || |||||| |||| || || | | | | || |||||||||
Sbjct 6946 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTAC 6887
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001
|| || ||||||| |||| | ||||| || ||
Sbjct 6886 AATATTTAAAAAGAATCCACTCTCCATTTAGTATT 6852
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||| ||||||| || ||||| | || || ||| |||||| | || || ||| |
Sbjct 6836 AATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTC 6777
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || | ||| || ||| ||||| || ||||||||| | || ||
Sbjct 6776 TGATTCCATTGAAAAT--GTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGAC 6719
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || | |||||||||||||||||| |||| || |||| | | | || || |||||
Sbjct 6718 CAATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTAT 6659
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||||| ||||||| || || || || ||||| |||
Sbjct 6658 AACATCTAAAAAGAAAGTACCTTACACTTGGTATTG 6623
Score = 86.0 bits (94), Expect = 4e-12
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||| ||||||| || ||||| | ||||| ||| |||||| | ||||| ||| |
Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || | ||| |||||| ||||| ||||||||||| |||| ||
Sbjct 8773 TGATTCTATTGAAAAT--GTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGAC 8830
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || | |||||||| || |||||| |||| || || | | | | || |||||||||
Sbjct 8831 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTAC 8890
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001
|| || ||||||| |||| | ||||| || ||
Sbjct 8891 AATATTTAAAAAGAATCCACTCTCCATTTAGTATT 8925
>seq167
Length=324310
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|||||| |||| || || ||||| | || || ||| || || | || |||||| |
Sbjct 152490 AAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCC 152549
Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||| | | || |||||| ||||| ||||||||||| | || ||
Sbjct 152550 TCTGACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGAC 152609
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || | |||||||| || |||||| |||| || |||| | | | ||| || ||||||
Sbjct 152610 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTAC 152669
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001
||||| ||||||| ||| || ||||| || ||
Sbjct 152670 AACATTTAAAAAGAATCCACCTTACATTTAGTCTT 152704
>seq129
Length=365655
Score = 82.4 bits (90), Expect = 5e-11
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 27885 CAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA 27944
||||||||| ||||| || || || || | |||||||| ||| || | ||||| ||
Sbjct 253222 CAAAGAAGGAATTCCGCCTGACCAATAAAGGCTTATTTTTGCGGGACAATAGTTGGAAGA 253163
Query 27945 CGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| | || || || | || || || ||||||| ||||||||||| |||||||||
Sbjct 253162 CGAAGGAAGTTTAGCCTAATATAAAATATAAAAAGAAAGCACTTTGCACTTGGTTTTG 253105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355861150922976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |