Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq130 95.1 3e-14 seq249 93.3 1e-13 >seq130 Length=530367 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 ||||||| |||||||||||| | | || ||||||||||| | | || || ||||| Sbjct 6417 TCTTTTTAGATGTTATAATCAGATAAAGTTCTTCCATCTTCTAATTATTTTCCAGCGAAA 6476 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || | | || ||| ||||| |||| |||||| ||||| | || || ||| || ||| Sbjct 6477 ATTAATCTTTATTGATCAGGGGGAATTCCTTCTTTGTCTTAAATTTTAGCTTTAACATTT 6536 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || |||| ||||| |||||| || | ||| || || ||||| || Sbjct 6537 TCAATGGAATCAGAAGATTCAACGTCTAAAGTAATGGTTTTTCCAGT 6583 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || |||||||| ||||||| || || ||||| | | || ||||| Sbjct 8929 TCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGATAAAGTTCTTCC 8870 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | | || || ||||| || | | || ||||||||| |||| |||||| || Sbjct 8869 ATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGGTCAGGGGGAATTCCTTCTTT 8810 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || ||||| || | ||||| |||||| || | ||| || Sbjct 8809 GTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCAGAAGATTCAACATCTAAAGTAAT 8750 Query 211079 CGTCTTTCCCGT 211090 || ||||| || Sbjct 8749 AGTTTTTCCAGT 8738 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | || |||||||| ||||||| || || ||||| | | || ||||| Sbjct 6848 TCTTAATACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCGGATAAAGTTCTTCC 6907 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | | || || ||||| || | | || ||| ||||| |||| |||||| || Sbjct 6908 ATCTTCTAATTATTTTCCAGCGAAAATTAATCTTTATTGATCAGGGGGAATTCCTTCTTT 6967 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || ||||| || | || || |||||| || | ||| || Sbjct 6968 GTCTTAAATTTTAGCTTTGACATTTTCAATAGAATCGGAAGATTCAACATCTAAAGTAAT 7027 Query 211079 CGTCTTTCCCGT 211090 || ||||| || Sbjct 7028 AGTTTTTCCAGT 7039 >seq249 Length=567749 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | ||| | ||||| ||||||| ||| || ||||| | | || ||||| Sbjct 154898 TCTTAAAACTAAGTGTAAGGTGGATTCTTTTTAGATATTGTAATCAGATAAAGTTCTTCC 154839 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | | || || |||||||| | | || ||| ||||| || | ||||| || Sbjct 154838 ATCTTCTAATTATTTTCCGGCGAAGATTAATCTTTATTGATCAGGGGGGATACCTTCTTT 154779 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || | ||| || ||| ||||||||||| | || || ||| || || || ||||| Sbjct 154778 ATCTTAGATTTTGGCTTTGACGTTTTCGATAGAATCGGAAGCTTCGACGTCAAGGGTGAT 154719 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || || || || | | |||||| Sbjct 154718 AGTTTTCCCGGTAAGGGTTTTGACGAAAATTTACATTTT 154680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147722729120