Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudocohnilembus_20persalinus_20[genbank_20GCA_5F001447515.1_202015 -11-24] 288 sequences; 55,455,357 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq167 154 1e-32 seq249 138 8e-28 seq130 138 8e-28 seq129 98.7 7e-16 >seq167 Length=324310 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| | || |||||||||||| | || |||||||| |||||| | || || || ||| Sbjct 152490 AAAATGTAAATCTTCGTTAAAACCTTAACCGGAAAAACCATCACTTTGGACGTCGAATCC 152549 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| || |||||| | ||| ||||| ||||||||||| | || || || Sbjct 152550 TCTGACTCTATTGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGAATCCCCCCTGAC 152609 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||| | | ||||| || || || ||| || | ||||||| | | || ||| |||||| Sbjct 152610 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTAC 152669 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||||| ||||| ||||||||||| ||||| ||| ||||||| Sbjct 152670 AACATTTAAAAAGAATCCACCTTACATTTAGTCTTAAGATTGAGAGGAGG 152719 Score = 145 bits (160), Expect = 5e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| | ||||| || ||||| | || |||||||| |||||| | || ||||| || | Sbjct 152949 ATGTAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACTTTGGACGTTGAATCTTCT 153008 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||||| | ||||| | |||| || ||||||||||| | || || ||||| Sbjct 153009 GACTCTATTGAAAATGTTAAAGCTAAAATTTAA-GACAAAGAAGGAATCCCCCCCGATCA 153067 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | ||||| || ||||| ||| || | ||||||| | | |||||| || || || Sbjct 153068 ATAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAA 153127 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||||| ||||| ||||| ||||| ||||| || |||||||| Sbjct 153128 CATCTAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGAGGA 153176 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| | |||||||||||||| | || |||||||| || ||| | || ||||| || | Sbjct 152721 ATGTAAATTTTCGTTAAAACTTTAACCGGAAAAACTATTACTTTGGATGTTGAATCTTCT 152780 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | ||| |||| ||||| | |||||| || |||||||| | || || || || Sbjct 152781 GACTCCATTGAAAATGTTAAAGC-TAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCA 152839 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | ||||| || ||||| ||| || | ||||||| | | |||||| || || || Sbjct 152840 ATAAAGATTAATTTTCGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGACTATAA 152899 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||||| ||||| ||||| ||||||||||| ||| ||||||| Sbjct 152900 TATCTAAAAAGAATCCACTTTACACTTAGTTTTAAGATTGAGAGGAGG 152947 >seq249 Length=567749 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| | |||||||| |||||||| || || ||||| ||||| || || || || | Sbjct 154680 AAAATGTAAATTTTCGTCAAAACCCTTACCGGGAAAACTATCACCCTTGACGTCGAAGCT 154739 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| | ||| ||||| || ||||||||| | || || ||| Sbjct 154740 TCCGATTCTATCGAAAACGTCAAAGCCAAAATCTAAGATAAAGAAGGTATCCCCCCTGAT 154799 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||| | | ||||| || ||||| ||| || | ||||| | | | |||||| |||||| Sbjct 154800 CAATAAAGATTAATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTAC 154859 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 154860 AATATCTAAAAAGAATCCACCTTACACTTAGTTTTAAGATTAAGAGGAGGA 154910 >seq130 Length=530367 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | |||||||| |||||| | || |||||||| || ||| | || ||||| || | Sbjct 7064 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 7005 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||| |||||| ||||||||||| | || || ||||| Sbjct 7004 CGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGATCA 6945 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | ||||| || || || ||| || | ||||| | | | |||||| ||||||||| Sbjct 6944 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 6885 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||| ||||| | |||||||| ||||| || |||||||| Sbjct 6884 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGA 6836 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | ||||||||||||||| | || |||||||| || ||| | || ||||| || | Sbjct 8713 AATGTAAATTTTCGTTAAAACCTTAACTGGAAAAACTATTACTTTAGATGTTGAATCTTC 8772 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||| |||||| ||||||||||| | || || || || Sbjct 8773 TGATTCTATTGAAAATGTCAAAGCTAAAATTTAAGACAAAGAAGGAATTCCCCCTGACCA 8832 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | ||||| || || || ||| || | ||||| | | | |||||| ||||||||| Sbjct 8833 ATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCCGATTACAA 8892 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||| ||||| | |||||||| ||||| || |||||||| Sbjct 8893 TATTTAAAAAGAATCCACTCTCCATTTAGTATTAAGATTAAGAGGAGGA 8941 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | ||||||||||||||| | || |||||||| || || | || ||||| || | Sbjct 6836 AATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCTTC 6777 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || | ||| |||| ||||| | |||||| || ||||||||| | || || || | Sbjct 6776 TGATTCCATTGAAAATGTTAAAGC-TAAAATTTAAGATAAAGAAGGTATCCCCCCTGACC 6718 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 || | | ||||| |||||||| ||| || | ||||||| | | |||||| ||||| | Sbjct 6717 AATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACTTTATCTGATTATA 6658 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| ||||||| || ||||| || || || || || |||||||| Sbjct 6657 ACATCTAAAAAGAAAGTACCTTACACTTGGTATTGAGATTAAGAGGAGGA 6608 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | |||||||| |||||| | || |||||||| || ||| | || ||||| || | Sbjct 6608 AATGTAAATTTTCGTCAAAACCTTAACTGGAAAAACCATTACTTTAGACGTTGAATCTTC 6549 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || | |||||| | ||||| | |||| || ||||||||||| | || || |||| Sbjct 6548 TGATTCCATTGAAAATGTTAAAGCTAAAATTTAA-GACAAAGAAGGAATTCCCCCTGATC 6490 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 || | | ||||| || || || ||| || | ||||| | | | |||||| ||||| | Sbjct 6489 AATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGATGGAAGAACTTTATCTGATTATA 6430 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 |||| ||||||| || ||||| || || ||||| || ||||||||| Sbjct 6429 ACATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGGAT 6379 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | |||||||||||||| | || |||||||| || ||| | || ||||| ||| | Sbjct 8941 AATGTAAATTTTCGTTAAAACTTTGACTGGAAAAACTATTACTTTAGATGTTGAATCCTC 9000 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||||| | ||| |||||| || |||||||| | || || || || Sbjct 9001 TGATTCCATTGAAAATGTCAAAGCCAAAATTTAAGATAAAGAAGGAATTCCCCCTGACCA 9060 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | ||||| |||||||| ||| || | ||||||| | | || ||| ||||| || Sbjct 9061 ATAAAGATTAATTTTTGCCGGAAAATAATTAGAAGACGGAAGAACCTTATCTGATTATAA 9120 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 || ||||||| || ||||| || || ||||| || ||||||||| Sbjct 9121 TATCTAAAAAGAAAGTACCTTACACTTGGTCTTAAGATTAAGAGGAGGAT 9170 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||| | ||||||||||||||| | || |||||||| || || | || ||||| || Sbjct 7294 AATATGTAAATTTTCGTTAAAACCTTAACCGGAAAAACTATTACCTTAGACGTTGAATCA 7235 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | |||||| | ||| |||||| || ||||||||| | || || || Sbjct 7234 TCCGATTCCATTGAAAACGTTAAAGCTAAAATTTAAGATAAAGAAGGTATCCCCCCTGAC 7175 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||| | | ||||| || || || ||| || | ||||||| | | |||||| ||| || Sbjct 7174 CAATAAAGATTAATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACTTTATCCGACTAT 7115 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||||| || ||||| ||||| ||||| || |||||||| Sbjct 7114 AATATCTAAAAAGAAAGTACCTTACACTTAGTCTTAAGATTAAGAGGAGGA 7064 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 23617 ATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACT 23676 ||||||||||||||| | || |||||||| || | | | || | || || | Sbjct 13641 ATTTTCGTTAAAACCTTAACCGGAAAAACTATTTATTTAAACTTTAATTCATATGATTCC 13700 Query 23677 GTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGT 23736 |||||| | ||| |||||| || ||||||||| | || || || ||| | | Sbjct 13701 ATTGAAAACGTTAAAGGTAAAATTTAAGATAAAGAAGGTATCCCCCCTGACCAATAAAGA 13760 Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796 ||||| || || || ||| || | ||||||| | | |||||| |||||| ||||| || Sbjct 13761 TTAATTTTCGCTGGAAAAAAATTAGAAGACGGAAGAACTTTATCCGATTATAACATTTAA 13820 Query 23797 AAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || ||||| || | ||||| || ||||||| Sbjct 13821 AAAGAAAGTACCTTACACTTGTTATTAAGTTTAAGAGGAGG 13861 >seq129 Length=365655 Score = 98.7 bits (108), Expect = 7e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||| | |||| ||| ||||| | ||||||||||| ||||| ||| | || || | Sbjct 253319 AAATGGAAATTTACGTAAAAACTTTAACGGGAAAAACAATCACCCTCTACGTAGAAGCTT 253260 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGA-CAAAGAAGGTGTACCGCCAGAT 23727 | || || | ||||| | || |||||||| | || ||||||||| | ||||| || Sbjct 253259 CAGAGACAATAGAAATTTGTAAGAAAAAAATT-CAGAGCAAAGAAGGAATTCCGCCTGAC 253201 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||| | | | || ||||| || || | ||||||||||| | | ||||| | | || Sbjct 253200 CAATAAAGGCTTATTTTTGCGGGACAATAGTTGGAAGACGAAGGAAGTTTAGCCTAATAT 253141 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||| ||||||| ||| || || || ||||| || Sbjct 253140 AAAATATAAAAAGAAAGCACTTTGCACTTGGTTTTGAG 253103 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 23623 GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAA 23682 || |||||| | || ||||||| || || || | | || | ||||||| ||||| Sbjct 254849 GTAAAAACCTTAACTGGAAAAAAAATAACACTTAAGGCCGAATTTTCGGACACAATTGAA 254790 Query 23683 ATATTAAAA--CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAA 23740 | |||||| ||||| ||| | | |||| || ||| || ||| || | | ||| Sbjct 254789 AATTTAAAAGCCAAAATATT--TAATGAAGATGGAACACCTCCCGATTAATAAAGGCTAA 254732 Query 23741 TATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAG 23800 | ||||| || || ||| | ||||| ||| | |||||| |||| || || |||||| Sbjct 254731 TTTTTGCAGGAAAGCAATTAGAAGATGAAAGAACTTTATCTGATTGTAATATTTAAAAAG 254672 Query 23801 AGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || || ||||||||||| ||| | |||||||| Sbjct 254671 AAAGTACCTTGCATTTAGTTTTGAGGCTAAGAGGAGGA 254634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008413586304